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3M6S
Biol. Unit 1
Info
Asym.Unit (483 KB)
Biol.Unit 1 (239 KB)
Biol.Unit 2 (240 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF H1N1PDM HEMAGGLUTININ
Authors
:
H. Yang, P. J. Carney, J. Stevens
Date
:
16 Mar 10 (Deposition) - 31 Mar 10 (Release) - 19 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Influenza Virus, Hemagglutinin, Pandemic, Envelope Protein, Fusion Protein, Host Cell Membrane, Host Membrane, Membrane, Transmembrane, Virion, Viral Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. Yang, P. Carney, J. Stevens
Structure And Receptor Binding Properties Of A Pandemic H1N Virus Hemagglutinin
Plos Curr N1152 2010
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ALPHA-D-MANNOSE (MANa)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MAN
-1
Ligand/Ion
ALPHA-D-MANNOSE
2
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:64 , GLU A:66 , ASN A:87 , CYS A:90 , PRO A:137 , ARG A:221
BINDING SITE FOR RESIDUE NAG A 328
2
AC2
SOFTWARE
ASN C:64 , ASP C:86 , ASN C:87 , ARG C:221 , NAG C:329
BINDING SITE FOR RESIDUE NAG C 328
3
AC3
SOFTWARE
NAG C:328
BINDING SITE FOR RESIDUE NAG C 329
4
AC4
SOFTWARE
ASN E:64 , ASP E:86 , ASN E:87 , CYS E:90 , PRO E:137 , ARG E:221
BINDING SITE FOR RESIDUE NAG E 328
5
BC2
SOFTWARE
ILE C:216 , NAG K:328
BINDING SITE FOR RESIDUE NAG K 329
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d3m6sa_ (A:)
1b: SCOP_d3m6sc_ (C:)
1c: SCOP_d3m6se_ (E:)
1d: SCOP_d3m6sg_ (G:)
1e: SCOP_d3m6si_ (I:)
1f: SCOP_d3m6sk_ (K:)
2a: SCOP_d3m6sb_ (B:)
2b: SCOP_d3m6sd_ (D:)
2c: SCOP_d3m6sf_ (F:)
2d: SCOP_d3m6sh_ (H:)
2e: SCOP_d3m6sj_ (J:)
2f: SCOP_d3m6sl_ (L:)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
1a
d3m6sa_
A:
1b
d3m6sc_
C:
1c
d3m6se_
E:
1d
d3m6sg_
G:
1e
d3m6si_
I:
1f
d3m6sk_
K:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
Influenza hemagglutinin (stalk)
(102)
Influenza A virus, different strains [TaxId: 11320]
(93)
2a
d3m6sb_
B:
2b
d3m6sd_
D:
2c
d3m6sf_
F:
2d
d3m6sh_
H:
2e
d3m6sj_
J:
2f
d3m6sl_
L:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Hemagglutinin_3m6sL01 (L:2-172)
1b: PFAM_Hemagglutinin_3m6sL02 (L:2-172)
1c: PFAM_Hemagglutinin_3m6sL03 (L:2-172)
1d: PFAM_Hemagglutinin_3m6sL04 (L:2-172)
1e: PFAM_Hemagglutinin_3m6sL05 (L:2-172)
1f: PFAM_Hemagglutinin_3m6sL06 (L:2-172)
1g: PFAM_Hemagglutinin_3m6sL07 (L:2-172)
1h: PFAM_Hemagglutinin_3m6sL08 (L:2-172)
1i: PFAM_Hemagglutinin_3m6sL09 (L:2-172)
1j: PFAM_Hemagglutinin_3m6sL10 (L:2-172)
1k: PFAM_Hemagglutinin_3m6sL11 (L:2-172)
1l: PFAM_Hemagglutinin_3m6sL12 (L:2-172)
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Clan
:
no clan defined [family: Hemagglutinin]
(58)
Family
:
Hemagglutinin
(58)
Influenza A virus (A/Darwin/2001/2009(H1N1))
(1)
1a
Hemagglutinin-3m6sL01
L:2-172
1b
Hemagglutinin-3m6sL02
L:2-172
1c
Hemagglutinin-3m6sL03
L:2-172
1d
Hemagglutinin-3m6sL04
L:2-172
1e
Hemagglutinin-3m6sL05
L:2-172
1f
Hemagglutinin-3m6sL06
L:2-172
1g
Hemagglutinin-3m6sL07
L:2-172
1h
Hemagglutinin-3m6sL08
L:2-172
1i
Hemagglutinin-3m6sL09
L:2-172
1j
Hemagglutinin-3m6sL10
L:2-172
1k
Hemagglutinin-3m6sL11
L:2-172
1l
Hemagglutinin-3m6sL12
L:2-172
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Asymmetric Unit 1
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Asym.Unit (483 KB)
Header - Asym.Unit
Biol.Unit 1 (239 KB)
Header - Biol.Unit 1
Biol.Unit 2 (240 KB)
Header - Biol.Unit 2
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