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3M6M
Asym. Unit
Info
Asym.Unit (371 KB)
Biol.Unit 1 (363 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RPFF COMPLEXED WITH REC DOMAIN OF RPFC
Authors
:
Z. Cheng, S. C. Lim, R. Qamra, H. Song
Date
:
16 Mar 10 (Deposition) - 22 Sep 10 (Release) - 16 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Rpff, Rec, Rpfc, Enoyl-Coa Hydratase, Lyase-Transferase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Cheng, Y. W. He, S. C. Lim, R. Qamra, M. A. Walsh, L. H. Zhang, H. Song
Structural Basis Of The Sensor-Synthase Interaction In Autoinduction Of The Quorum Sensing Signal Dsf Biosynthesis
Structure V. 18 1199 2010
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Hetero Components
(3, 20)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
2a: IODIDE ION (IODa)
2b: IODIDE ION (IODb)
2c: IODIDE ION (IODc)
2d: IODIDE ION (IODd)
2e: IODIDE ION (IODe)
2f: IODIDE ION (IODf)
2g: IODIDE ION (IODg)
2h: IODIDE ION (IODh)
2i: IODIDE ION (IODi)
2j: IODIDE ION (IODj)
2k: IODIDE ION (IODk)
2l: IODIDE ION (IODl)
2m: IODIDE ION (IODm)
2n: IODIDE ION (IODn)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
2
IOD
14
Ligand/Ion
IODIDE ION
3
MG
3
Ligand/Ion
MAGNESIUM ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL E:568
BINDING SITE FOR RESIDUE IOD E 3
02
AC2
SOFTWARE
ASN F:473
BINDING SITE FOR RESIDUE IOD F 7
03
AC3
SOFTWARE
GLY C:154 , GLU C:198
BINDING SITE FOR RESIDUE IOD C 290
04
AC4
SOFTWARE
GLY B:154 , GLU B:198
BINDING SITE FOR RESIDUE IOD B 290
05
AC5
SOFTWARE
GLY A:154 , GLU A:198
BINDING SITE FOR RESIDUE IOD A 290
06
AC6
SOFTWARE
GLY A:86 , LEU A:88 , GLY A:137 , GLU A:161 , PHE A:164
BINDING SITE FOR RESIDUE EDO A 902
07
AC7
SOFTWARE
ASP D:469 , ASP D:512 , HIS D:514
BINDING SITE FOR RESIDUE MG D 591
08
AC8
SOFTWARE
LEU B:84 , GLY B:85 , GLY B:86 , GLY B:137 , GLY B:138 , PRO B:160 , GLU B:161
BINDING SITE FOR RESIDUE EDO B 903
09
AC9
SOFTWARE
ASP E:512 , HIS E:514 , LYS E:566
BINDING SITE FOR RESIDUE MG E 591
10
BC1
SOFTWARE
LEU C:84 , GLY C:86 , GLY C:138 , GLU C:161
BINDING SITE FOR RESIDUE EDO C 904
11
BC2
SOFTWARE
ASP F:469 , ASP F:512 , HIS F:514
BINDING SITE FOR RESIDUE MG F 3
12
BC3
SOFTWARE
GLN C:178 , ARG C:240 , THR C:244
BINDING SITE FOR RESIDUE IOD C 292
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: RESPONSE_REGULATORY (D:463-581,E:463-581,F:463-581)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RESPONSE_REGULATORY
PS50110
Response regulatory domain profile.
RPFC_XANCP
463-581
3
D:463-581
E:463-581
F:463-581
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
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Info
all CATH domains
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Response_reg_3m6mF01 (F:462-529)
1b: PFAM_Response_reg_3m6mF02 (F:462-529)
1c: PFAM_Response_reg_3m6mF03 (F:462-529)
2a: PFAM_ECH_3m6mC01 (C:48-280)
2b: PFAM_ECH_3m6mC02 (C:48-280)
2c: PFAM_ECH_3m6mC03 (C:48-280)
View:
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Clans
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)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
CheY
(97)
Family
:
Response_reg
(94)
Xanthomonas campestris pv. campestris
(1)
1a
Response_reg-3m6mF01
F:462-529
1b
Response_reg-3m6mF02
F:462-529
1c
Response_reg-3m6mF03
F:462-529
Clan
:
ClpP_crotonase
(88)
Family
:
ECH
(52)
Xanthomonas campestris pv. campestris
(2)
2a
ECH-3m6mC01
C:48-280
2b
ECH-3m6mC02
C:48-280
2c
ECH-3m6mC03
C:48-280
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Chain F
Asymmetric Unit 1
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Asym.Unit (371 KB)
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