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3M6G
Asym. Unit
Info
Asym.Unit (140 KB)
Biol.Unit 1 (132 KB)
Biol.Unit 2 (68 KB)
Biol.Unit 3 (70 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ACTIN IN COMPLEX WITH LOBOPHOROLIDE
Authors
:
J. S. Allingham
Date
:
15 Mar 10 (Deposition) - 08 Sep 10 (Release) - 28 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Actin, Macrolide, Lobophorolide, Actin Dimer, Marine Toxin, Atp- Binding, Cytoskeleton, Muscle Protein, Nucleotide-Binding, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
J. C. Blain, Y. F. Mok, J. Kubanek, J. S. Allingham
Two Molecules Of Lobophorolide Cooperate To Stabilize An Actin Dimer Using Both Their "Ring" And "Tail" Region.
Chem. Biol. V. 17 802 2010
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: (1S,3S,4S,5S,7R,8S,9R,12E,14E,16R,... (LO3a)
3b: (1S,3S,4S,5S,7R,8S,9R,12E,14E,16R,... (LO3b)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
2
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CA
4
Ligand/Ion
CALCIUM ION
3
LO3
2
Ligand/Ion
(1S,3S,4S,5S,7R,8S,9R,12E,14E,16R,17R,19R)-16-HYDROXY-9-{(1S,2S,3S)-2-HYDROXY-5-[(2S,4R,6S)-4-METHOXY-6-METHYLTETRAHYDRO-2H-PYRAN-2-YL]-1,3-DIMETHYLPENTYL}-3,5,7,17-TETRAMETHOXY-8,14-DIMETHYL-11H-SPIRO[10,23-DIOXABICYCLO[17.3.1]TRICOSA-12,14,20-TRIENE-4,2'-OXIRAN]-11-ONE
4
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:376 , HOH A:385 , HOH A:386 , HOH A:410 , HOH A:438 , ATP A:1380
BINDING SITE FOR RESIDUE MG A 1390
02
AC2
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:158 , VAL A:159 , GLY A:182 , LYS A:213 , GLU A:214 , GLY A:301 , GLY A:302 , THR A:303 , MET A:305 , TYR A:306 , LYS A:336 , HOH A:385 , HOH A:386 , HOH A:426 , HOH A:428 , HOH A:438 , HOH A:441 , HOH A:451 , HOH A:564 , MG A:1390
BINDING SITE FOR RESIDUE ATP A 1380
03
AC3
SOFTWARE
TYR A:133 , TYR A:143 , ALA A:144 , SER A:145 , GLY A:146 , ARG A:147 , ILE A:345 , LEU A:346 , LEU A:349 , THR A:351 , HOH A:487 , HOH A:553 , HOH A:556 , HOH A:669 , ASP B:24 , SER B:344 , ILE B:345 , SER B:348 , HOH B:399 , LO3 B:600
BINDING SITE FOR RESIDUE LO3 A 600
04
AC4
SOFTWARE
GLU A:205 , HOH A:434 , HOH A:452 , HOH A:539 , HOH A:559
BINDING SITE FOR RESIDUE CA A 372
05
AC5
SOFTWARE
VAL A:30 , HOH A:491 , HOH A:505 , HOH A:626 , HOH A:627 , HOH A:628
BINDING SITE FOR RESIDUE CA A 373
06
AC6
SOFTWARE
HOH B:387 , HOH B:388 , HOH B:389 , HOH B:394 , HOH B:407 , ATP B:2380
BINDING SITE FOR RESIDUE MG B 2390
07
AC7
SOFTWARE
GLY B:13 , SER B:14 , GLY B:15 , LEU B:16 , LYS B:18 , GLY B:156 , ASP B:157 , GLY B:158 , VAL B:159 , GLY B:182 , ARG B:210 , LYS B:213 , GLU B:214 , GLY B:301 , GLY B:302 , THR B:303 , MET B:305 , TYR B:306 , LYS B:336 , HOH B:379 , HOH B:387 , HOH B:388 , HOH B:392 , HOH B:407 , HOH B:422 , HOH B:434 , HOH B:538 , HOH B:682 , HOH B:716 , MG B:2390
BINDING SITE FOR RESIDUE ATP B 2380
08
AC8
SOFTWARE
ASP A:24 , SER A:344 , ILE A:345 , SER A:348 , HOH A:395 , LO3 A:600 , TYR B:133 , TYR B:143 , ALA B:144 , SER B:145 , GLY B:146 , ARG B:147 , ILE B:345 , LEU B:346 , LEU B:349 , THR B:351 , MET B:355 , HOH B:401 , HOH B:452 , HOH B:466 , HOH B:541 , HOH B:691
BINDING SITE FOR RESIDUE LO3 B 600
09
AC9
SOFTWARE
GLN B:354 , TRP B:356 , GLU B:361 , HOH B:655 , HOH B:699 , HOH B:721
BINDING SITE FOR RESIDUE CA B 372
10
BC1
SOFTWARE
VAL B:30 , HOH B:418 , HOH B:506 , HOH B:567 , HOH B:664 , HOH B:694
BINDING SITE FOR RESIDUE CA B 373
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:53-63,B:53-63)
2: ACTINS_ACT_LIKE (A:104-116,B:104-116)
3: ACTINS_2 (A:356-364,B:356-364)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
2
A:53-63
B:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
2
A:104-116
B:104-116
3
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
2
A:356-364
B:356-364
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3m6ga1 (A:6-146)
1b: SCOP_d3m6ga2 (A:147-371)
1c: SCOP_d3m6gb1 (B:4-146)
1d: SCOP_d3m6gb2 (B:147-371)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
automated matches
(47)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(9)
1a
d3m6ga1
A:6-146
1b
d3m6ga2
A:147-371
1c
d3m6gb1
B:4-146
1d
d3m6gb2
B:147-371
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Actin_3m6gB01 (B:4-371)
1b: PFAM_Actin_3m6gB02 (B:4-371)
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(
)
Clan
:
Actin_ATPase
(173)
Family
:
Actin
(70)
Oryctolagus cuniculus (Rabbit)
(47)
1a
Actin-3m6gB01
B:4-371
1b
Actin-3m6gB02
B:4-371
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Asymmetric Unit 1
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Asym.Unit (140 KB)
Header - Asym.Unit
Biol.Unit 1 (132 KB)
Header - Biol.Unit 1
Biol.Unit 2 (68 KB)
Header - Biol.Unit 2
Biol.Unit 3 (70 KB)
Header - Biol.Unit 3
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