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3M5J
Asym. Unit
Info
Asym.Unit (251 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (84 KB)
Biol.Unit 3 (85 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A H7 INFLUENZA VIRUS HEMAGGLUTININ COMPLEXED WITH LSTB
Authors
:
H. Yang, L. M. Chen, P. J. Carney, R. O. Donis, J. Stevens
Date
:
12 Mar 10 (Deposition) - 22 Sep 10 (Release) - 22 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Influenza Virus, Hemagglutinin, Lstb, Envelope Protein, Fusion Protein, Host Cell Membrane, Host Membrane, Membrane, Transmembrane, Virion, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Yang, L. M. Chen, P. J. Carney, R. O. Donis, J. Stevens
Structures Of Receptor Complexes Of A North American H7N2 Influenza Hemagglutinin With A Loop Deletion In The Recepto Binding Site.
Plos Pathog. V. 6 E1001 2010
[
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4a: O-SIALIC ACID (SIAa)
4b: O-SIALIC ACID (SIAb)
4c: O-SIALIC ACID (SIAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
2
GOL
5
Ligand/Ion
GLYCEROL
3
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SIA
3
Ligand/Ion
O-SIALIC ACID
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:38 , ALA A:39 , THR A:40
BINDING SITE FOR RESIDUE NAG A 1
02
AC2
SOFTWARE
NAG A:2 , TYR A:98 , GLY A:134 , ALA A:135 , THR A:136 , SER A:137 , LEU A:155 , HIS A:183 , GLU A:190 , LEU A:194 , ARG A:220
BINDING SITE FOR RESIDUE SIA A 331
03
AC3
SOFTWARE
GAL A:3 , GAL A:4 , SIA A:331 , GLU C:121 , SER C:122
BINDING SITE FOR RESIDUE NAG A 2
04
AC4
SOFTWARE
NAG A:2
BINDING SITE FOR RESIDUE GAL A 3
05
AC5
SOFTWARE
NAG A:2 , SER A:137 , GLU C:121 , ARG C:172
BINDING SITE FOR RESIDUE GAL A 4
06
AC6
SOFTWARE
ARG A:300 , GLU B:72 , GLN B:75 , GLY B:78 , ASN B:79 , ASN B:82 , ARG E:114
BINDING SITE FOR RESIDUE NAG B 183
07
AC7
SOFTWARE
ARG B:54 , LEU B:55 , TYR D:94
BINDING SITE FOR RESIDUE GOL B 185
08
AC8
SOFTWARE
ARG B:170 , ARG D:170 , GLU F:128
BINDING SITE FOR RESIDUE GOL B 186
09
AC9
SOFTWARE
ASN C:38 , ALA C:39
BINDING SITE FOR RESIDUE NAG C 1
10
BC1
SOFTWARE
NAG C:2 , TYR C:98 , ALA C:135 , THR C:136 , SER C:137 , HIS C:183 , GLU C:190 , LEU C:194 , ARG C:220
BINDING SITE FOR RESIDUE SIA C 331
11
BC2
SOFTWARE
SIA C:331
BINDING SITE FOR RESIDUE NAG C 2
12
BC3
SOFTWARE
ARG A:114 , GLN D:75 , ASN D:79 , ASN D:82
BINDING SITE FOR RESIDUE NAG D 183
13
BC4
SOFTWARE
ARG D:54 , LEU D:55 , LYS D:58 , GLU F:97 , LEU F:98
BINDING SITE FOR RESIDUE GOL D 184
14
BC5
SOFTWARE
ASN E:38 , THR E:40 , HOH E:389
BINDING SITE FOR RESIDUE NAG E 1
15
BC6
SOFTWARE
NAG E:2 , TYR E:98 , ALA E:135 , THR E:136 , SER E:137 , HIS E:183 , GLU E:190 , LEU E:194 , ARG E:220
BINDING SITE FOR RESIDUE SIA E 331
16
BC7
SOFTWARE
SIA E:331
BINDING SITE FOR RESIDUE NAG E 2
17
BC8
SOFTWARE
ARG C:114 , GLN F:75 , GLY F:78 , ASN F:79 , ASN F:82
BINDING SITE FOR RESIDUE NAG F 183
18
BC9
SOFTWARE
TYR B:94 , GLU B:97 , ARG F:54 , LEU F:55 , LYS F:58 , LEU F:99 , HOH F:538
BINDING SITE FOR RESIDUE GOL F 184
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d3m5ja_ (A:)
1b: SCOP_d3m5jc_ (C:)
1c: SCOP_d3m5je_ (E:)
2a: SCOP_d3m5jb_ (B:)
2b: SCOP_d3m5jd_ (D:)
2c: SCOP_d3m5jf_ (F:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
automated matches
(43)
Influenza A virus [TaxId: 490450]
(3)
1a
d3m5ja_
A:
1b
d3m5jc_
C:
1c
d3m5je_
E:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
Influenza hemagglutinin (stalk)
(102)
Influenza A virus, different strains [TaxId: 11320]
(93)
2a
d3m5jb_
B:
2b
d3m5jd_
D:
2c
d3m5jf_
F:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Hemagglutinin_3m5jE01 (E:13-325)
1b: PFAM_Hemagglutinin_3m5jE02 (E:13-325)
1c: PFAM_Hemagglutinin_3m5jE03 (E:13-325)
2a: PFAM_Hemagglutinin_3m5jF01 (F:1-171)
2b: PFAM_Hemagglutinin_3m5jF02 (F:1-171)
2c: PFAM_Hemagglutinin_3m5jF03 (F:1-171)
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Clans
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(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Hemagglutinin]
(58)
Family
:
Hemagglutinin
(58)
Influenza A virus (A/chicken/New Jersey/Sg-00421/2004(H7N2))
(4)
1a
Hemagglutinin-3m5jE01
E:13-325
1b
Hemagglutinin-3m5jE02
E:13-325
1c
Hemagglutinin-3m5jE03
E:13-325
Influenza A virus (A/environment/New York/30732-1/2005(H7N2))
(4)
2a
Hemagglutinin-3m5jF01
F:1-171
2b
Hemagglutinin-3m5jF02
F:1-171
2c
Hemagglutinin-3m5jF03
F:1-171
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Asymmetric Unit 1
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Asym.Unit (251 KB)
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