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3M49
Asym. Unit
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Asym.Unit (462 KB)
Biol.Unit 1 (451 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRANSKETOLASE COMPLEXED WITH THIAMINE DIPHOSPHATE FROM BACILLUS ANTHRACIS
Authors
:
N. Maltseva, Y. Kim, K. Kwon, W. F. Anderson, A. Joachimiak
Date
:
10 Mar 10 (Deposition) - 07 Apr 10 (Release) - 07 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Alpha-Beta-Alpha Sandwich, Csgid, Transferase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Maltseva, Y. Kim, K. Kwon, W. F. Anderson, A. Joachimiak
Crystal Structure Of Transketolase Complexed With Thiamine Diphosphate From Bacillus Anthracis
To Be Published
[
close entry info
]
Hetero Components
(11, 80)
Info
All Hetero Components
01a: ACETIC ACID (ACYa)
02a: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBa)
03a: FORMIC ACID (FMTa)
03b: FORMIC ACID (FMTb)
03c: FORMIC ACID (FMTc)
03d: FORMIC ACID (FMTd)
03e: FORMIC ACID (FMTe)
03f: FORMIC ACID (FMTf)
03g: FORMIC ACID (FMTg)
03h: FORMIC ACID (FMTh)
03i: FORMIC ACID (FMTi)
03j: FORMIC ACID (FMTj)
03k: FORMIC ACID (FMTk)
03l: FORMIC ACID (FMTl)
04a: GLYCEROL (GOLa)
04b: GLYCEROL (GOLb)
04c: GLYCEROL (GOLc)
04d: GLYCEROL (GOLd)
04e: GLYCEROL (GOLe)
04f: GLYCEROL (GOLf)
04g: GLYCEROL (GOLg)
04h: GLYCEROL (GOLh)
05a: MAGNESIUM ION (MGa)
06a: SELENOMETHIONINE (MSEa)
06aa: SELENOMETHIONINE (MSEaa)
06ab: SELENOMETHIONINE (MSEab)
06ac: SELENOMETHIONINE (MSEac)
06ad: SELENOMETHIONINE (MSEad)
06ae: SELENOMETHIONINE (MSEae)
06af: SELENOMETHIONINE (MSEaf)
06ag: SELENOMETHIONINE (MSEag)
06ah: SELENOMETHIONINE (MSEah)
06ai: SELENOMETHIONINE (MSEai)
06aj: SELENOMETHIONINE (MSEaj)
06ak: SELENOMETHIONINE (MSEak)
06al: SELENOMETHIONINE (MSEal)
06am: SELENOMETHIONINE (MSEam)
06an: SELENOMETHIONINE (MSEan)
06ao: SELENOMETHIONINE (MSEao)
06ap: SELENOMETHIONINE (MSEap)
06b: SELENOMETHIONINE (MSEb)
06c: SELENOMETHIONINE (MSEc)
06d: SELENOMETHIONINE (MSEd)
06e: SELENOMETHIONINE (MSEe)
06f: SELENOMETHIONINE (MSEf)
06g: SELENOMETHIONINE (MSEg)
06h: SELENOMETHIONINE (MSEh)
06i: SELENOMETHIONINE (MSEi)
06j: SELENOMETHIONINE (MSEj)
06k: SELENOMETHIONINE (MSEk)
06l: SELENOMETHIONINE (MSEl)
06m: SELENOMETHIONINE (MSEm)
06n: SELENOMETHIONINE (MSEn)
06o: SELENOMETHIONINE (MSEo)
06p: SELENOMETHIONINE (MSEp)
06q: SELENOMETHIONINE (MSEq)
06r: SELENOMETHIONINE (MSEr)
06s: SELENOMETHIONINE (MSEs)
06t: SELENOMETHIONINE (MSEt)
06u: SELENOMETHIONINE (MSEu)
06v: SELENOMETHIONINE (MSEv)
06w: SELENOMETHIONINE (MSEw)
06x: SELENOMETHIONINE (MSEx)
06y: SELENOMETHIONINE (MSEy)
06z: SELENOMETHIONINE (MSEz)
07a: DI(HYDROXYETHYL)ETHER (PEGa)
07b: DI(HYDROXYETHYL)ETHER (PEGb)
08a: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-... (PG5a)
09a: SULFATE ION (SO4a)
09b: SULFATE ION (SO4b)
09c: SULFATE ION (SO4c)
09d: SULFATE ION (SO4d)
09e: SULFATE ION (SO4e)
09f: SULFATE ION (SO4f)
09g: SULFATE ION (SO4g)
09h: SULFATE ION (SO4h)
09i: SULFATE ION (SO4i)
10a: THIAMIN DIPHOSPHATE (TDPa)
10b: THIAMIN DIPHOSPHATE (TDPb)
11a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
1
Ligand/Ion
ACETIC ACID
2
BTB
1
Ligand/Ion
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
3
FMT
12
Ligand/Ion
FORMIC ACID
4
GOL
8
Ligand/Ion
GLYCEROL
5
MG
1
Ligand/Ion
MAGNESIUM ION
6
MSE
42
Mod. Amino Acid
SELENOMETHIONINE
7
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
8
PG5
1
Ligand/Ion
1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE
9
SO4
9
Ligand/Ion
SULFATE ION
10
TDP
2
Ligand/Ion
THIAMIN DIPHOSPHATE
11
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
close Hetero Component info
]
Sites
(37, 37)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:68 , GLY A:116 , LEU A:118 , ASP A:157 , GLY A:158 , GLU A:162 , ASN A:187 , ILE A:189 , LEU A:191 , ILE A:249 , HIS A:263 , MG A:716 , GOL A:719 , HOH A:946 , HOH A:953 , HOH A:1039 , ASP B:381 , GLU B:412 , PHE B:438 , TYR B:441 , HIS B:474
BINDING SITE FOR RESIDUE TDP A 701
02
AC2
SOFTWARE
HIS A:474 , HOH A:1061 , HOH A:1062 , HIS B:28 , HIS B:68 , HIS B:102 , GLY B:116 , TDP B:701
BINDING SITE FOR RESIDUE SO4 A 702
03
AC3
SOFTWARE
GLY A:96
BINDING SITE FOR RESIDUE FMT A 703
04
AC4
SOFTWARE
SER A:2 , LEU A:8 , ASN A:11 , TYR A:279 , ALA A:280 , TRP A:281 , SO4 A:709 , GOL A:720 , HOH A:1135
BINDING SITE FOR RESIDUE GOL A 704
05
AC5
SOFTWARE
ASN A:345 , PRO A:347 , THR B:348 , GLU B:350 , LYS B:531
BINDING SITE FOR RESIDUE GOL A 705
06
AC6
SOFTWARE
ARG A:358 , SER A:385 , HIS A:462 , ARG A:521 , HOH A:1056
BINDING SITE FOR RESIDUE SO4 A 706
07
AC7
SOFTWARE
ARG A:591 , HOH A:792 , HOH A:996
BINDING SITE FOR RESIDUE SO4 A 707
08
AC8
SOFTWARE
ARG A:239 , HOH A:849 , ARG B:298
BINDING SITE FOR RESIDUE SO4 A 708
09
AC9
SOFTWARE
GLN A:7 , ASN A:11 , TYR A:279 , GOL A:704
BINDING SITE FOR RESIDUE SO4 A 709
10
BC1
SOFTWARE
TYR A:535 , GLU A:536
BINDING SITE FOR RESIDUE FMT A 710
11
BC2
SOFTWARE
ARG A:660 , LYS A:661
BINDING SITE FOR RESIDUE ACY A 711
12
BC3
SOFTWARE
TYR A:105 , GLY A:106 , MSE A:452 , PEG A:713 , HOH A:911
BINDING SITE FOR RESIDUE PG5 A 712
13
BC4
SOFTWARE
TYR A:105 , GLN A:453 , THR A:511 , PG5 A:712 , HOH A:999 , HOH A:1227
BINDING SITE FOR RESIDUE PEG A 713
14
BC5
SOFTWARE
GLU A:291 , TYR A:294 , ARG A:298
BINDING SITE FOR RESIDUE TRS A 714
15
BC6
SOFTWARE
VAL A:544 , SER A:582 , SER A:602 , VAL A:603 , HOH A:1104
BINDING SITE FOR RESIDUE FMT A 715
16
BC7
SOFTWARE
ASP A:157 , ASN A:187 , ILE A:189 , TDP A:701 , HOH A:1038
BINDING SITE FOR RESIDUE MG A 716
17
BC8
SOFTWARE
GLU A:218 , ASP A:219 , ASN A:221 , ARG A:246 , THR A:248 , FMT A:721 , HOH A:981
BINDING SITE FOR RESIDUE PEG A 717
18
BC9
SOFTWARE
HIS A:3 , GLU A:292
BINDING SITE FOR RESIDUE FMT A 718
19
CC1
SOFTWARE
HIS A:28 , LEU A:191 , HIS A:263 , TDP A:701 , HOH A:930 , HOH A:983 , ASP B:470 , HIS B:474 , HOH B:1197
BINDING SITE FOR RESIDUE GOL A 719
20
CC2
SOFTWARE
LEU A:8 , ALA A:280 , TRP A:281 , THR A:282 , ALA A:283 , GOL A:704 , HOH A:1100
BINDING SITE FOR RESIDUE GOL A 720
21
CC3
SOFTWARE
GLY A:34 , ASN A:221 , THR A:247 , THR A:248 , PEG A:717
BINDING SITE FOR RESIDUE FMT A 721
22
CC4
SOFTWARE
ASN A:488 , VAL A:489 , HOH A:833 , HOH A:835 , HOH A:924 , HOH A:1224
BINDING SITE FOR RESIDUE SO4 A 722
23
CC5
SOFTWARE
ARG A:505 , HOH A:969 , HOH A:1080
BINDING SITE FOR RESIDUE FMT A 723
24
CC6
SOFTWARE
LYS A:23 , LYS A:90 , GLN A:94 , HOH A:725 , HOH A:826 , HOH A:844 , HOH A:1047
BINDING SITE FOR RESIDUE GOL A 724
25
CC7
SOFTWARE
ASP A:381 , LEU A:382 , GLU A:412 , PHE A:438 , TYR A:441 , HIS A:474 , SO4 A:702 , MSE B:31 , HIS B:68 , GLY B:116 , LEU B:118 , ASP B:157 , GLY B:158 , GLU B:162 , ASN B:187 , ILE B:189 , LEU B:191 , ILE B:249 , HIS B:263 , HOH B:953 , HOH B:954 , HOH B:979 , HOH B:1060
BINDING SITE FOR RESIDUE TDP B 701
26
CC8
SOFTWARE
ASN B:488 , VAL B:489 , LYS B:513 , ASP B:590 , HOH B:1047 , HOH B:1125 , HOH B:1178
BINDING SITE FOR RESIDUE SO4 B 702
27
CC9
SOFTWARE
THR A:348 , GLU A:350 , LYS A:531 , HOH A:1171 , ASN B:345 , PRO B:347 , ALA B:367 , GLU B:370 , HOH B:873 , HOH B:1024
BINDING SITE FOR RESIDUE BTB B 703
28
DC1
SOFTWARE
SER A:26 , GLU B:469 , ARG B:521 , HOH B:812 , HOH B:1197
BINDING SITE FOR RESIDUE FMT B 704
29
DC2
SOFTWARE
ARG B:505 , TYR B:535 , HOH B:811 , HOH B:876
BINDING SITE FOR RESIDUE GOL B 705
30
DC3
SOFTWARE
TYR B:535 , GLU B:536 , HOH B:1028
BINDING SITE FOR RESIDUE FMT B 707
31
DC4
SOFTWARE
ARG B:358 , SER B:385 , HIS B:462 , ARG B:521 , HOH B:999
BINDING SITE FOR RESIDUE SO4 B 708
32
DC5
SOFTWARE
THR B:85 , MSE B:86 , GOL B:710 , HOH B:1152
BINDING SITE FOR RESIDUE FMT B 709
33
DC6
SOFTWARE
GLU B:291 , TYR B:294 , FMT B:709
BINDING SITE FOR RESIDUE GOL B 710
34
DC7
SOFTWARE
THR B:55 , PHE B:57 , ARG B:59 , HIS B:425 , HOH B:1158
BINDING SITE FOR RESIDUE FMT B 711
35
DC8
SOFTWARE
ALA B:383 , GLY B:384 , HOH B:1053
BINDING SITE FOR RESIDUE GOL B 712
36
DC9
SOFTWARE
ALA B:280 , TRP B:281 , THR B:282
BINDING SITE FOR RESIDUE FMT B 713
37
EC1
SOFTWARE
ARG B:591 , HOH B:840 , HOH B:1015 , HOH B:1028
BINDING SITE FOR RESIDUE SO4 B 714
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d3m49a1 (A:2-337)
1b: SCOP_d3m49a2 (A:338-527)
1c: SCOP_d3m49b1 (B:3-337)
1d: SCOP_d3m49b2 (B:338-527)
2a: SCOP_d3m49a3 (A:528-666)
2b: SCOP_d3m49b3 (B:528-666)
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(
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Families
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Superfamily
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Family
:
automated matches
(65)
Protein domain
:
automated matches
(65)
Bacillus anthracis [TaxId: 261594]
(2)
1a
d3m49a1
A:2-337
1b
d3m49a2
A:338-527
1c
d3m49b1
B:3-337
1d
d3m49b2
B:338-527
Fold
:
TK C-terminal domain-like
(79)
Superfamily
:
TK C-terminal domain-like
(79)
Family
:
automated matches
(9)
Protein domain
:
automated matches
(9)
Bacillus anthracis [TaxId: 261594]
(2)
2a
d3m49a3
A:528-666
2b
d3m49b3
B:528-666
[
close SCOP info
]
CATH Domains
(0, 0 ; only for superseded entry 3K95: 2,6)
Info
all CATH domains
1a: CATH_3k95A03 ()
1b: CATH_3k95B03 ()
2a: CATH_3k95A02 ()
2b: CATH_3k95B02 ()
2c: CATH_3k95B01 ()
2d: CATH_3k95A01 ()
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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