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3M3E
Biol. Unit 2
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Asym.Unit (118 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (58 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AGROCYBE AEGERITA LECTIN AAL MUTANT E66A COMPLEXED WITH P-NITROPHENYL THOMSEN-FRIEDENREICH DISACCHARIDE
Authors
:
L. Feng, D. Li, D. Wang
Date
:
09 Mar 10 (Deposition) - 01 Dec 10 (Release) - 01 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Galectin, Aal, Mutant, Thomsen-Friedenreich Disaccharide, Apoptosis, Hydrolase, Lectin, Nuclease, Gal-Beta-1, 3-Galnac-Alpha-O-P- Nitrophenyl
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Feng, H. Sun, Y. Zhang, D. F. Li, D. C. Wang
Structural Insights Into The Recognition Mechanism Between An Antitumor Galectin Aal And The Thomsen-Friedenreich Antigen
Faseb J. V. 24 3861 2010
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Ga)
1b: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gb)
1c: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gc)
1d: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gd)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
2d: BETA-D-GALACTOSE (GALd)
3a: P-NITROPHENOL (NPOa)
3b: P-NITROPHENOL (NPOb)
3c: P-NITROPHENOL (NPOc)
3d: P-NITROPHENOL (NPOd)
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No.
Name
Count
Type
Full Name
1
A2G
2
Ligand/Ion
N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
3
NPO
2
Ligand/Ion
P-NITROPHENOL
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Sites
(6, 6)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
3: AC9 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC2 (SOFTWARE)
6: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
ASN C:43 , HIS C:59 , ARG C:63 , ASN C:72 , GLU C:83 , HOH C:171 , HOH C:204 , A2G C:241 , HOH C:487
BINDING SITE FOR RESIDUE GAL C 240
2
AC8
SOFTWARE
ARG C:63 , GLU C:83 , HOH C:168 , HOH C:171 , GAL C:240 , NPO C:242
BINDING SITE FOR RESIDUE A2G C 241
3
AC9
SOFTWARE
HOH C:222 , A2G C:241
BINDING SITE FOR RESIDUE NPO C 242
4
BC1
SOFTWARE
PRO D:42 , ASN D:43 , HIS D:59 , ARG D:63 , ASN D:72 , TRP D:80 , GLU D:83 , HOH D:176 , HOH D:186 , HOH D:198 , A2G D:241 , HOH D:472
BINDING SITE FOR RESIDUE GAL D 240
5
BC2
SOFTWARE
PRO D:42 , ARG D:63 , GLU D:83 , ARG D:85 , HOH D:180 , HOH D:198 , GAL D:240 , NPO D:242 , HOH D:567
BINDING SITE FOR RESIDUE A2G D 241
6
BC3
SOFTWARE
HOH C:430 , A2G D:241 , HOH D:544
BINDING SITE FOR RESIDUE NPO D 242
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GALECTIN (C:12-155,D:12-155)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GALECTIN
PS51304
Galactoside-binding lectin (galectin) domain profile.
ATLE_AGRAE
12-155
2
-
-
C:12-155
D:12-155
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3m3ea_ (A:)
1b: SCOP_d3m3eb_ (B:)
1c: SCOP_d3m3ec_ (C:)
1d: SCOP_d3m3ed_ (D:)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
automated matches
(133)
Protein domain
:
automated matches
(133)
Agrocybe aegerita [TaxId: 5400]
(18)
1a
d3m3ea_
A:
1b
d3m3eb_
B:
1c
d3m3ec_
C:
1d
d3m3ed_
D:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (118 KB)
Header - Asym.Unit
Biol.Unit 1 (58 KB)
Header - Biol.Unit 1
Biol.Unit 2 (58 KB)
Header - Biol.Unit 2
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