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3M1N
Biol. Unit 2
Info
Asym.Unit (66 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (32 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN SONIC HEDGEHOG N-TERMINAL DOMAIN
Authors
:
P. A. Boriack-Sjodin, R. B. Pepinsky, E. A. Garber, L. F. Silvian
Date
:
05 Mar 10 (Deposition) - 16 Mar 10 (Release) - 16 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hedgehog Proteins, Signaling, Zinc Ions, Sulfate Ions, Autocatalytic Cleavage, Cell Membrane, Developmental Protein, Glycoprotein, Holoprosencephaly, Hydrolase, Lipoprotein, Membrane, Microphthalmia, Palmitate, Protease, Secreted, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. B. Pepinsky, P. Rayhorn, E. S. Day, A. Dergay, K. P. Williams, A. Galdes, F. R. Taylor, P. A. Boriack-Sjodin, E. A. Garber
Mapping Sonic Hedgehog-Receptor Interactions By Steric Interference.
J. Biol. Chem. V. 275 10995 2000
[
close entry info
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
6
Ligand/Ion
SULFATE ION
2
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: AC9 (SOFTWARE)
6: BC1 (SOFTWARE)
7: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
HIS B:140 , ASP B:147 , HIS B:182
BINDING SITE FOR RESIDUE ZN B 700
2
AC6
SOFTWARE
ARG B:163 , HOH B:199 , HOH B:220
BINDING SITE FOR RESIDUE SO4 B 201
3
AC7
SOFTWARE
HOH B:16 , ARG B:28 , GLY B:29 , PHE B:30 , GLY B:31 , ARG B:33
BINDING SITE FOR RESIDUE SO4 B 202
4
AC8
SOFTWARE
ARG B:33 , ARG B:34 , HIS B:35 , HOH B:319
BINDING SITE FOR RESIDUE SO4 B 703
5
AC9
SOFTWARE
LYS B:87 , ARG B:123 , ARG B:153 , HOH B:213 , HOH B:259
BINDING SITE FOR RESIDUE SO4 B 704
6
BC1
SOFTWARE
HIS B:35 , GLY B:60 , ARG B:61 , HOH B:203 , HOH B:319 , HOH B:339 , HOH B:530 , HOH B:566
BINDING SITE FOR RESIDUE SO4 B 1
7
BC2
SOFTWARE
ARG B:101 , LYS B:105
BINDING SITE FOR RESIDUE SO4 B 2
[
close Site info
]
SAPs(SNPs)/Variants
(36, 36)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_062593 (P26L, chain B, )
02: VAR_039888 (G27A, chain B, )
03: VAR_003619 (G31R, chain B, )
04: VAR_062594 (L39P, chain B, )
05: VAR_062595 (E53K, chain B, )
06: VAR_062596 (D83V, chain B, )
07: VAR_062597 (I84F, chain B, )
08: VAR_009163 (D88V, chain B, )
09: VAR_009164 (Q100H, chain B, )
10: VAR_062598 (C102R, chain B, )
11: VAR_062599 (C102Y, chain B, )
12: VAR_062600 (L109F, chain B, )
13: VAR_023806 (A110D, chain B, )
14: VAR_062601 (A110T, chain B, )
15: VAR_017883 (I111F, chain B, )
16: VAR_039889 (I111N, chain B, )
17: VAR_009165 (N115K, chain B, )
18: VAR_003620 (W117G, chain B, )
19: VAR_003621 (W117R, chain B, )
20: VAR_062602 (V124M, chain B, )
21: VAR_062603 (E136K, chain B, )
22: VAR_039890 (H140P, chain B, )
23: VAR_039891 (H140Q, chain B, )
24: VAR_062604 (G143D, chain B, )
25: VAR_062605 (R144P, chain B, )
26: VAR_062606 (D147N, chain B, )
27: VAR_062607 (T150K, chain B, )
28: VAR_023807 (T150R, chain B, )
29: VAR_062608 (S156R, chain B, )
30: VAR_062609 (F170C, chain B, )
31: VAR_062610 (D171H, chain B, )
32: VAR_039892 (C183F, chain B, )
33: VAR_062611 (C183R, chain B, )
34: VAR_062612 (C183Y, chain B, )
35: VAR_062613 (S184L, chain B, )
36: VAR_009166 (E188Q, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_062593
P
26
L
SHH_HUMAN
Disease (HPE3)
---
B
P
26
L
02
UniProt
VAR_039888
G
27
A
SHH_HUMAN
Disease (HPE3)
---
B
G
27
A
03
UniProt
VAR_003619
G
31
R
SHH_HUMAN
Disease (HPE3)
28936675
B
G
31
R
04
UniProt
VAR_062594
L
39
P
SHH_HUMAN
Disease (HPE3)
---
B
L
39
P
05
UniProt
VAR_062595
E
53
K
SHH_HUMAN
Disease (HPE3)
---
B
E
53
K
06
UniProt
VAR_062596
D
83
V
SHH_HUMAN
Disease (HPE3)
---
B
D
83
V
07
UniProt
VAR_062597
I
84
F
SHH_HUMAN
Disease (HPE3)
---
B
I
84
F
08
UniProt
VAR_009163
D
88
V
SHH_HUMAN
Disease (HPE3)
---
B
D
88
V
09
UniProt
VAR_009164
Q
100
H
SHH_HUMAN
Disease (HPE3)
---
B
Q
100
H
10
UniProt
VAR_062598
C
102
R
SHH_HUMAN
Disease (HPE3)
---
B
C
102
R
11
UniProt
VAR_062599
C
102
Y
SHH_HUMAN
Disease (HPE3)
---
B
C
102
Y
12
UniProt
VAR_062600
L
109
F
SHH_HUMAN
Disease (HPE3)
---
B
L
109
F
13
UniProt
VAR_023806
A
110
D
SHH_HUMAN
Disease (HPE3)
---
B
A
110
D
14
UniProt
VAR_062601
A
110
T
SHH_HUMAN
Disease (HPE3)
---
B
A
110
T
15
UniProt
VAR_017883
I
111
F
SHH_HUMAN
Disease (SMMCI)
---
B
I
111
F
16
UniProt
VAR_039889
I
111
N
SHH_HUMAN
Disease (HPE3)
---
B
I
111
N
17
UniProt
VAR_009165
N
115
K
SHH_HUMAN
Disease (HPE3)
---
B
N
115
K
18
UniProt
VAR_003620
W
117
G
SHH_HUMAN
Disease (HPE3)
---
B
W
117
G
19
UniProt
VAR_003621
W
117
R
SHH_HUMAN
Disease (HPE3)
---
B
W
117
R
20
UniProt
VAR_062602
V
124
M
SHH_HUMAN
Disease (HPE3)
---
B
V
124
M
21
UniProt
VAR_062603
E
136
K
SHH_HUMAN
Disease (HPE3)
---
B
E
136
K
22
UniProt
VAR_039890
H
140
P
SHH_HUMAN
Disease (HPE3)
---
B
H
140
P
23
UniProt
VAR_039891
H
140
Q
SHH_HUMAN
Disease (HPE3)
---
B
H
140
Q
24
UniProt
VAR_062604
G
143
D
SHH_HUMAN
Disease (HPE3)
---
B
G
143
D
25
UniProt
VAR_062605
R
144
P
SHH_HUMAN
Disease (HPE3)
---
B
R
144
P
26
UniProt
VAR_062606
D
147
N
SHH_HUMAN
Disease (HPE3)
---
B
D
147
N
27
UniProt
VAR_062607
T
150
K
SHH_HUMAN
Disease (HPE3)
---
B
T
150
K
28
UniProt
VAR_023807
T
150
R
SHH_HUMAN
Disease (HPE3)
---
B
T
150
R
29
UniProt
VAR_062608
S
156
R
SHH_HUMAN
Disease (HPE3)
---
B
S
156
R
30
UniProt
VAR_062609
F
170
C
SHH_HUMAN
Disease (HPE3)
---
B
F
170
C
31
UniProt
VAR_062610
D
171
H
SHH_HUMAN
Disease (HPE3)
---
B
D
171
H
32
UniProt
VAR_039892
C
183
F
SHH_HUMAN
Disease (HPE3)
---
B
C
183
F
33
UniProt
VAR_062611
C
183
R
SHH_HUMAN
Disease (HPE3)
---
B
C
183
R
34
UniProt
VAR_062612
C
183
Y
SHH_HUMAN
Disease (HPE3)
---
B
C
183
Y
35
UniProt
VAR_062613
S
184
L
SHH_HUMAN
Disease (HPE3)
---
B
S
184
L
36
UniProt
VAR_009166
E
188
Q
SHH_HUMAN
Disease (HPE3)
---
B
E
188
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3m1na_ (A:)
1b: SCOP_d3m1nb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Hedgehog/DD-peptidase
(29)
Superfamily
:
Hedgehog/DD-peptidase
(29)
Family
:
Hedgehog (development protein), N-terminal signaling domain
(23)
Protein domain
:
automated matches
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d3m1na_
A:
1b
d3m1nb_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_Hint_3m1nB01 (B:187-190)
2a: PFAM_HH_signal_3m1nB02 (B:25-184)
2b: PFAM_HH_signal_3m1nB03 (B:25-184)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
H-int
(15)
Family
:
Hint
(8)
Homo sapiens (Human)
(7)
1a
Hint-3m1nB01
B:187-190
Clan
:
Peptidase_MD
(20)
Family
:
HH_signal
(16)
Homo sapiens (Human)
(13)
2a
HH_signal-3m1nB02
B:25-184
2b
HH_signal-3m1nB03
B:25-184
[
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]
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Chain B
Asymmetric Unit 1
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