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3M1N
Asym. Unit
Info
Asym.Unit (66 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (32 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN SONIC HEDGEHOG N-TERMINAL DOMAIN
Authors
:
P. A. Boriack-Sjodin, R. B. Pepinsky, E. A. Garber, L. F. Silvian
Date
:
05 Mar 10 (Deposition) - 16 Mar 10 (Release) - 16 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hedgehog Proteins, Signaling, Zinc Ions, Sulfate Ions, Autocatalytic Cleavage, Cell Membrane, Developmental Protein, Glycoprotein, Holoprosencephaly, Hydrolase, Lipoprotein, Membrane, Microphthalmia, Palmitate, Protease, Secreted, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. B. Pepinsky, P. Rayhorn, E. S. Day, A. Dergay, K. P. Williams, A. Galdes, F. R. Taylor, P. A. Boriack-Sjodin, E. A. Garber
Mapping Sonic Hedgehog-Receptor Interactions By Steric Interference.
J. Biol. Chem. V. 275 10995 2000
[
close entry info
]
Hetero Components
(2, 11)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
9
Ligand/Ion
SULFATE ION
2
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:140 , ASP A:147 , GLU A:176 , HIS A:182
BINDING SITE FOR RESIDUE ZN A 200
02
AC2
SOFTWARE
ARG A:163 , HOH A:211 , HOH A:242 , HOH A:248
BINDING SITE FOR RESIDUE SO4 A 701
03
AC3
SOFTWARE
LYS A:87 , ARG A:123 , ARG A:153 , HOH A:719
BINDING SITE FOR RESIDUE SO4 A 702
04
AC4
SOFTWARE
ARG A:101 , LYS A:105 , HOH A:250 , HOH A:272
BINDING SITE FOR RESIDUE SO4 A 705
05
AC5
SOFTWARE
HIS B:140 , ASP B:147 , HIS B:182
BINDING SITE FOR RESIDUE ZN B 700
06
AC6
SOFTWARE
ARG B:163 , HOH B:199 , HOH B:220
BINDING SITE FOR RESIDUE SO4 B 201
07
AC7
SOFTWARE
HOH B:16 , ARG B:28 , GLY B:29 , PHE B:30 , GLY B:31 , ARG B:33
BINDING SITE FOR RESIDUE SO4 B 202
08
AC8
SOFTWARE
ARG B:33 , ARG B:34 , HIS B:35 , HOH B:319
BINDING SITE FOR RESIDUE SO4 B 703
09
AC9
SOFTWARE
LYS B:87 , ARG B:123 , ARG B:153 , HOH B:213 , HOH B:259
BINDING SITE FOR RESIDUE SO4 B 704
10
BC1
SOFTWARE
HIS B:35 , GLY B:60 , ARG B:61 , HOH B:203 , HOH B:319 , HOH B:339 , HOH B:530 , HOH B:566
BINDING SITE FOR RESIDUE SO4 B 1
11
BC2
SOFTWARE
ARG B:101 , LYS B:105
BINDING SITE FOR RESIDUE SO4 B 2
[
close Site info
]
SAPs(SNPs)/Variants
(36, 72)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_062593 (P26L, chain A/B, )
02: VAR_039888 (G27A, chain A/B, )
03: VAR_003619 (G31R, chain A/B, )
04: VAR_062594 (L39P, chain A/B, )
05: VAR_062595 (E53K, chain A/B, )
06: VAR_062596 (D83V, chain A/B, )
07: VAR_062597 (I84F, chain A/B, )
08: VAR_009163 (D88V, chain A/B, )
09: VAR_009164 (Q100H, chain A/B, )
10: VAR_062598 (C102R, chain A/B, )
11: VAR_062599 (C102Y, chain A/B, )
12: VAR_062600 (L109F, chain A/B, )
13: VAR_023806 (A110D, chain A/B, )
14: VAR_062601 (A110T, chain A/B, )
15: VAR_017883 (I111F, chain A/B, )
16: VAR_039889 (I111N, chain A/B, )
17: VAR_009165 (N115K, chain A/B, )
18: VAR_003620 (W117G, chain A/B, )
19: VAR_003621 (W117R, chain A/B, )
20: VAR_062602 (V124M, chain A/B, )
21: VAR_062603 (E136K, chain A/B, )
22: VAR_039890 (H140P, chain A/B, )
23: VAR_039891 (H140Q, chain A/B, )
24: VAR_062604 (G143D, chain A/B, )
25: VAR_062605 (R144P, chain A/B, )
26: VAR_062606 (D147N, chain A/B, )
27: VAR_062607 (T150K, chain A/B, )
28: VAR_023807 (T150R, chain A/B, )
29: VAR_062608 (S156R, chain A/B, )
30: VAR_062609 (F170C, chain A/B, )
31: VAR_062610 (D171H, chain A/B, )
32: VAR_039892 (C183F, chain A/B, )
33: VAR_062611 (C183R, chain A/B, )
34: VAR_062612 (C183Y, chain A/B, )
35: VAR_062613 (S184L, chain A/B, )
36: VAR_009166 (E188Q, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_062593
P
26
L
SHH_HUMAN
Disease (HPE3)
---
A/B
P
26
L
02
UniProt
VAR_039888
G
27
A
SHH_HUMAN
Disease (HPE3)
---
A/B
G
27
A
03
UniProt
VAR_003619
G
31
R
SHH_HUMAN
Disease (HPE3)
28936675
A/B
G
31
R
04
UniProt
VAR_062594
L
39
P
SHH_HUMAN
Disease (HPE3)
---
A/B
L
39
P
05
UniProt
VAR_062595
E
53
K
SHH_HUMAN
Disease (HPE3)
---
A/B
E
53
K
06
UniProt
VAR_062596
D
83
V
SHH_HUMAN
Disease (HPE3)
---
A/B
D
83
V
07
UniProt
VAR_062597
I
84
F
SHH_HUMAN
Disease (HPE3)
---
A/B
I
84
F
08
UniProt
VAR_009163
D
88
V
SHH_HUMAN
Disease (HPE3)
---
A/B
D
88
V
09
UniProt
VAR_009164
Q
100
H
SHH_HUMAN
Disease (HPE3)
---
A/B
Q
100
H
10
UniProt
VAR_062598
C
102
R
SHH_HUMAN
Disease (HPE3)
---
A/B
C
102
R
11
UniProt
VAR_062599
C
102
Y
SHH_HUMAN
Disease (HPE3)
---
A/B
C
102
Y
12
UniProt
VAR_062600
L
109
F
SHH_HUMAN
Disease (HPE3)
---
A/B
L
109
F
13
UniProt
VAR_023806
A
110
D
SHH_HUMAN
Disease (HPE3)
---
A/B
A
110
D
14
UniProt
VAR_062601
A
110
T
SHH_HUMAN
Disease (HPE3)
---
A/B
A
110
T
15
UniProt
VAR_017883
I
111
F
SHH_HUMAN
Disease (SMMCI)
---
A/B
I
111
F
16
UniProt
VAR_039889
I
111
N
SHH_HUMAN
Disease (HPE3)
---
A/B
I
111
N
17
UniProt
VAR_009165
N
115
K
SHH_HUMAN
Disease (HPE3)
---
A/B
N
115
K
18
UniProt
VAR_003620
W
117
G
SHH_HUMAN
Disease (HPE3)
---
A/B
W
117
G
19
UniProt
VAR_003621
W
117
R
SHH_HUMAN
Disease (HPE3)
---
A/B
W
117
R
20
UniProt
VAR_062602
V
124
M
SHH_HUMAN
Disease (HPE3)
---
A/B
V
124
M
21
UniProt
VAR_062603
E
136
K
SHH_HUMAN
Disease (HPE3)
---
A/B
E
136
K
22
UniProt
VAR_039890
H
140
P
SHH_HUMAN
Disease (HPE3)
---
A/B
H
140
P
23
UniProt
VAR_039891
H
140
Q
SHH_HUMAN
Disease (HPE3)
---
A/B
H
140
Q
24
UniProt
VAR_062604
G
143
D
SHH_HUMAN
Disease (HPE3)
---
A/B
G
143
D
25
UniProt
VAR_062605
R
144
P
SHH_HUMAN
Disease (HPE3)
---
A/B
R
144
P
26
UniProt
VAR_062606
D
147
N
SHH_HUMAN
Disease (HPE3)
---
A/B
D
147
N
27
UniProt
VAR_062607
T
150
K
SHH_HUMAN
Disease (HPE3)
---
A/B
T
150
K
28
UniProt
VAR_023807
T
150
R
SHH_HUMAN
Disease (HPE3)
---
A/B
T
150
R
29
UniProt
VAR_062608
S
156
R
SHH_HUMAN
Disease (HPE3)
---
A/B
S
156
R
30
UniProt
VAR_062609
F
170
C
SHH_HUMAN
Disease (HPE3)
---
A/B
F
170
C
31
UniProt
VAR_062610
D
171
H
SHH_HUMAN
Disease (HPE3)
---
A/B
D
171
H
32
UniProt
VAR_039892
C
183
F
SHH_HUMAN
Disease (HPE3)
---
A/B
C
183
F
33
UniProt
VAR_062611
C
183
R
SHH_HUMAN
Disease (HPE3)
---
A/B
C
183
R
34
UniProt
VAR_062612
C
183
Y
SHH_HUMAN
Disease (HPE3)
---
A/B
C
183
Y
35
UniProt
VAR_062613
S
184
L
SHH_HUMAN
Disease (HPE3)
---
A/B
S
184
L
36
UniProt
VAR_009166
E
188
Q
SHH_HUMAN
Disease (HPE3)
---
A/B
E
188
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3m1na_ (A:)
1b: SCOP_d3m1nb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Hedgehog/DD-peptidase
(29)
Superfamily
:
Hedgehog/DD-peptidase
(29)
Family
:
Hedgehog (development protein), N-terminal signaling domain
(23)
Protein domain
:
automated matches
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d3m1na_
A:
1b
d3m1nb_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_Hint_3m1nB01 (B:187-190)
2a: PFAM_HH_signal_3m1nB02 (B:25-184)
2b: PFAM_HH_signal_3m1nB03 (B:25-184)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
H-int
(15)
Family
:
Hint
(8)
Homo sapiens (Human)
(7)
1a
Hint-3m1nB01
B:187-190
Clan
:
Peptidase_MD
(20)
Family
:
HH_signal
(16)
Homo sapiens (Human)
(13)
2a
HH_signal-3m1nB02
B:25-184
2b
HH_signal-3m1nB03
B:25-184
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]
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Asym.Unit (66 KB)
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