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3M1B
Biol. Unit 3
Info
Asym.Unit (232 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 10 (7 KB)
Biol.Unit 2 (21 KB)
Biol.Unit 3 (44 KB)
Biol.Unit 4 (21 KB)
Biol.Unit 5 (43 KB)
Biol.Unit 6 (21 KB)
Biol.Unit 7 (44 KB)
Biol.Unit 8 (21 KB)
Biol.Unit 9 (6 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN FCRN WITH A DIMERIC PEPTIDE INHIBITOR
Authors
:
A. R. Mezo, V. Sridhar, J. Badger, P. Sakorafas, V. Nienaber
Date
:
04 Mar 10 (Deposition) - 16 Jun 10 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Keywords
:
Immunoglobulin Binding Protein, Cell Membrane, Disulfide Bond, Glycoprotein, Igg-Binding Protein, Immunoglobulin Domain, Membrane, Receptor, Transmembrane, Amyloid, Amyloidosis, Disease Mutation, Glycation, Immune Response, Mhc I, Pyrrolidone Carboxylic Acid, Secreted, Immune System-Immune System Inhibitor, Immune System- Inhibitor Complex
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Reference
:
A. R. Mezo, V. Sridhar, J. Badger, P. Sakorafas, V. Nienaber
X-Ray Crystal Structures Of Monomeric And Dimeric Peptide Inhibitors In Complex With The Human Neonatal Fc Receptor, Fcrn.
J. Biol. Chem. V. 285 27694 2010
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: 3-SULFANYL-L-VALINE (LE1a)
1b: 3-SULFANYL-L-VALINE (LE1b)
2a: N-METHYLLEUCINE (MLEa)
2b: N-METHYLLEUCINE (MLEb)
3a: SARCOSINE (SARa)
3b: SARCOSINE (SARb)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (C:250-256)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
0
-
-
-
-
FCGRN_HUMAN
273-279
1
-
C:250-256
-
-
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d3m1ba2 (A:177-267)
1b: SCOP_d3m1bc2 (C:177-267)
1c: SCOP_d3m1be2 (E:177-267)
1d: SCOP_d3m1bg2 (G:177-267)
2a: SCOP_d3m1bb_ (B:)
2b: SCOP_d3m1bd_ (D:)
2c: SCOP_d3m1bf_ (F:)
2d: SCOP_d3m1bh_ (H:)
3a: SCOP_d3m1ba1 (A:5-176)
3b: SCOP_d3m1bc1 (C:5-176)
3c: SCOP_d3m1be1 (E:5-176)
3d: SCOP_d3m1bg1 (G:5-176)
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Class
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All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
1a
d3m1ba2
A:177-267
1b
d3m1bc2
C:177-267
1c
d3m1be2
E:177-267
1d
d3m1bg2
G:177-267
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
2a
d3m1bb_
B:
2b
d3m1bd_
D:
2c
d3m1bf_
F:
2d
d3m1bh_
H:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
automated matches
(52)
Protein domain
:
automated matches
(52)
Human (Homo sapiens) [TaxId: 9606]
(14)
3a
d3m1ba1
A:5-176
3b
d3m1bc1
C:5-176
3c
d3m1be1
E:5-176
3d
d3m1bg1
G:5-176
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CATH Domains
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_C1_set_3m1bH01 (H:11-92)
1b: PFAM_C1_set_3m1bH02 (H:11-92)
1c: PFAM_C1_set_3m1bH03 (H:11-92)
1d: PFAM_C1_set_3m1bH04 (H:11-92)
1e: PFAM_C1_set_3m1bG01 (G:185-264)
1f: PFAM_C1_set_3m1bG02 (G:185-264)
1g: PFAM_C1_set_3m1bG03 (G:185-264)
1h: PFAM_C1_set_3m1bG04 (G:185-264)
2a: PFAM_MHC_I_3m1bG05 (G:5-174)
2b: PFAM_MHC_I_3m1bG06 (G:5-174)
2c: PFAM_MHC_I_3m1bG07 (G:5-174)
2d: PFAM_MHC_I_3m1bG08 (G:5-174)
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Clan
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Ig
(577)
Family
:
C1-set
(338)
Homo sapiens (Human)
(218)
1a
C1-set-3m1bH01
H:11-92
1b
C1-set-3m1bH02
H:11-92
1c
C1-set-3m1bH03
H:11-92
1d
C1-set-3m1bH04
H:11-92
1e
C1-set-3m1bG01
G:185-264
1f
C1-set-3m1bG02
G:185-264
1g
C1-set-3m1bG03
G:185-264
1h
C1-set-3m1bG04
G:185-264
Clan
:
MHC
(252)
Family
:
MHC_I
(210)
Homo sapiens (Human)
(144)
2a
MHC_I-3m1bG05
G:5-174
2b
MHC_I-3m1bG06
G:5-174
2c
MHC_I-3m1bG07
G:5-174
2d
MHC_I-3m1bG08
G:5-174
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Chain C
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (232 KB)
Header - Asym.Unit
Biol.Unit 1 (44 KB)
Header - Biol.Unit 1
Biol.Unit 10 (7 KB)
Header - Biol.Unit 10
Biol.Unit 2 (21 KB)
Header - Biol.Unit 2
Biol.Unit 3 (44 KB)
Header - Biol.Unit 3
Biol.Unit 4 (21 KB)
Header - Biol.Unit 4
Biol.Unit 5 (43 KB)
Header - Biol.Unit 5
Biol.Unit 6 (21 KB)
Header - Biol.Unit 6
Biol.Unit 7 (44 KB)
Header - Biol.Unit 7
Biol.Unit 8 (21 KB)
Header - Biol.Unit 8
Biol.Unit 9 (6 KB)
Header - Biol.Unit 9
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