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3M1B
Asym. Unit
Info
Asym.Unit (232 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 10 (7 KB)
Biol.Unit 2 (21 KB)
Biol.Unit 3 (44 KB)
Biol.Unit 4 (21 KB)
Biol.Unit 5 (43 KB)
Biol.Unit 6 (21 KB)
Biol.Unit 7 (44 KB)
Biol.Unit 8 (21 KB)
Biol.Unit 9 (6 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN FCRN WITH A DIMERIC PEPTIDE INHIBITOR
Authors
:
A. R. Mezo, V. Sridhar, J. Badger, P. Sakorafas, V. Nienaber
Date
:
04 Mar 10 (Deposition) - 16 Jun 10 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Keywords
:
Immunoglobulin Binding Protein, Cell Membrane, Disulfide Bond, Glycoprotein, Igg-Binding Protein, Immunoglobulin Domain, Membrane, Receptor, Transmembrane, Amyloid, Amyloidosis, Disease Mutation, Glycation, Immune Response, Mhc I, Pyrrolidone Carboxylic Acid, Secreted, Immune System-Immune System Inhibitor, Immune System- Inhibitor Complex
(Keyword Search:
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)
Reference
:
A. R. Mezo, V. Sridhar, J. Badger, P. Sakorafas, V. Nienaber
X-Ray Crystal Structures Of Monomeric And Dimeric Peptide Inhibitors In Complex With The Human Neonatal Fc Receptor, Fcrn.
J. Biol. Chem. V. 285 27694 2010
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: 3-SULFANYL-L-VALINE (LE1a)
1b: 3-SULFANYL-L-VALINE (LE1b)
2a: N-METHYLLEUCINE (MLEa)
2b: N-METHYLLEUCINE (MLEb)
3a: SARCOSINE (SARa)
3b: SARCOSINE (SARb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
LE1
2
Mod. Amino Acid
3-SULFANYL-L-VALINE
2
MLE
2
Mod. Amino Acid
N-METHYLLEUCINE
3
SAR
2
Mod. Amino Acid
SARCOSINE
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_076691 (D76N, chain B/D/F/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_076691
D
96
N
B2MG_HUMAN
Disease (AMYL8)
398122820
B/D/F/H
D
76
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,D:78-84,F:78-84,H:78-84,A:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
4
B:78-84
D:78-84
F:78-84
H:78-84
FCGRN_HUMAN
273-279
4
A:250-256
C:250-256
E:250-256
G:250-256
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Exons
(3, 12)
Info
All Exons
Exon 1.3 (A:5-86 | C:5-86 | E:5-86 | G:5-86)
Exon 1.4b (A:86-178 | C:86-178 | E:86-178 | G...)
Exon 1.6a (A:178-267 | C:178-267 | E:178-267 ...)
View:
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All Exon Boundaries
1: Boundary 1.2c/1.3
2: Boundary 1.3/1.4b
3: Boundary 1.4b/1.6a
4: Boundary 1.6a/1.7b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000221466
1
ENSE00001509905
chr19:
50015620-50016007
388
FCGRN_HUMAN
-
0
0
-
-
1.2c
ENST00000221466
2c
ENSE00001192687
chr19:
50016644-50016730
87
FCGRN_HUMAN
1-25
25
0
-
-
1.3
ENST00000221466
3
ENSE00001116461
chr19:
50017139-50017390
252
FCGRN_HUMAN
25-109
85
4
A:5-86
C:5-86
E:5-86
G:5-86
82
82
82
82
1.4b
ENST00000221466
4b
ENSE00001116460
chr19:
50017468-50017743
276
FCGRN_HUMAN
109-201
93
4
A:86-178
C:86-178
E:86-178
G:86-178
93
93
93
93
1.6a
ENST00000221466
6a
ENSE00000954708
chr19:
50027764-50028033
270
FCGRN_HUMAN
201-291
91
4
A:178-267
C:178-267
E:178-267
G:178-267
90
90
90
90
1.7b
ENST00000221466
7b
ENSE00000954709
chr19:
50028714-50028830
117
FCGRN_HUMAN
291-330
40
0
-
-
1.8
ENST00000221466
8
ENSE00001605505
chr19:
50029267-50029588
322
FCGRN_HUMAN
330-365
36
0
-
-
[
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SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d3m1ba2 (A:177-267)
1b: SCOP_d3m1bc2 (C:177-267)
1c: SCOP_d3m1be2 (E:177-267)
1d: SCOP_d3m1bg2 (G:177-267)
2a: SCOP_d3m1bb_ (B:)
2b: SCOP_d3m1bd_ (D:)
2c: SCOP_d3m1bf_ (F:)
2d: SCOP_d3m1bh_ (H:)
3a: SCOP_d3m1ba1 (A:5-176)
3b: SCOP_d3m1bc1 (C:5-176)
3c: SCOP_d3m1be1 (E:5-176)
3d: SCOP_d3m1bg1 (G:5-176)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
1a
d3m1ba2
A:177-267
1b
d3m1bc2
C:177-267
1c
d3m1be2
E:177-267
1d
d3m1bg2
G:177-267
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
2a
d3m1bb_
B:
2b
d3m1bd_
D:
2c
d3m1bf_
F:
2d
d3m1bh_
H:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
automated matches
(52)
Protein domain
:
automated matches
(52)
Human (Homo sapiens) [TaxId: 9606]
(14)
3a
d3m1ba1
A:5-176
3b
d3m1bc1
C:5-176
3c
d3m1be1
E:5-176
3d
d3m1bg1
G:5-176
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_C1_set_3m1bH01 (H:11-92)
1b: PFAM_C1_set_3m1bH02 (H:11-92)
1c: PFAM_C1_set_3m1bH03 (H:11-92)
1d: PFAM_C1_set_3m1bH04 (H:11-92)
1e: PFAM_C1_set_3m1bG01 (G:185-264)
1f: PFAM_C1_set_3m1bG02 (G:185-264)
1g: PFAM_C1_set_3m1bG03 (G:185-264)
1h: PFAM_C1_set_3m1bG04 (G:185-264)
2a: PFAM_MHC_I_3m1bG05 (G:5-174)
2b: PFAM_MHC_I_3m1bG06 (G:5-174)
2c: PFAM_MHC_I_3m1bG07 (G:5-174)
2d: PFAM_MHC_I_3m1bG08 (G:5-174)
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Families
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Organisms
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)
(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Homo sapiens (Human)
(218)
1a
C1-set-3m1bH01
H:11-92
1b
C1-set-3m1bH02
H:11-92
1c
C1-set-3m1bH03
H:11-92
1d
C1-set-3m1bH04
H:11-92
1e
C1-set-3m1bG01
G:185-264
1f
C1-set-3m1bG02
G:185-264
1g
C1-set-3m1bG03
G:185-264
1h
C1-set-3m1bG04
G:185-264
Clan
:
MHC
(252)
Family
:
MHC_I
(210)
Homo sapiens (Human)
(144)
2a
MHC_I-3m1bG05
G:5-174
2b
MHC_I-3m1bG06
G:5-174
2c
MHC_I-3m1bG07
G:5-174
2d
MHC_I-3m1bG08
G:5-174
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