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3M0X
Asym. Unit
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Asym.Unit (297 KB)
Biol.Unit 1 (291 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PSEUDOMONAS STUTZERI L-RHAMNOSE ISOMERASE MUTANT S329L IN COMPLEX WITH D-PSICOSE
Authors
:
H. Yoshida, K. Takeda, K. Izumori, S. Kamitori
Date
:
03 Mar 10 (Deposition) - 10 Nov 10 (Release) - 24 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.79
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Beta/Alpha Barrel, Homo-Tetramer, Metal-Binding Protein, Tim Barrel, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Yoshida, K. Takeda, K. Izumori, S. Kamitori
Elucidation Of The Role Of Ser329 And The C-Terminal Region In The Catalytic Activity Of Pseudomonas Stutzeri L-Rhamnos Isomerase
Protein Eng. Des. Sel. V. 23 919 2010
(for further references see the
PDB file header
)
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
1e: MANGANESE (II) ION (MNe)
1f: MANGANESE (II) ION (MNf)
1g: MANGANESE (II) ION (MNg)
1h: MANGANESE (II) ION (MNh)
2a: D-PSICOSE (PSJa)
2b: D-PSICOSE (PSJb)
2c: D-PSICOSE (PSJc)
2d: D-PSICOSE (PSJd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MN
8
Ligand/Ion
MANGANESE (II) ION
2
PSJ
4
Ligand/Ion
D-PSICOSE
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:219 , ASP A:254 , HIS A:281 , ASP A:327 , PSJ A:601
BINDING SITE FOR RESIDUE MN A 501
02
AC2
SOFTWARE
HIS A:257 , ASP A:289 , HOH A:506 , HOH A:550 , PSJ A:601
BINDING SITE FOR RESIDUE MN A 502
03
AC3
SOFTWARE
TRP A:57 , HIS A:101 , TRP A:179 , GLU A:219 , LYS A:221 , ASP A:254 , HIS A:257 , HIS A:281 , ASP A:289 , ASP A:327 , MN A:501 , MN A:502 , HOH A:506 , HOH A:550 , HOH A:561 , PHE B:66
BINDING SITE FOR RESIDUE PSJ A 601
04
AC4
SOFTWARE
GLU B:219 , ASP B:254 , HIS B:281 , ASP B:327 , PSJ B:602
BINDING SITE FOR RESIDUE MN B 503
05
AC5
SOFTWARE
HIS B:257 , ASP B:289 , HOH B:525 , HOH B:540 , PSJ B:602
BINDING SITE FOR RESIDUE MN B 504
06
AC6
SOFTWARE
PHE A:66 , HIS B:101 , TRP B:179 , GLU B:219 , LYS B:221 , ASP B:254 , HIS B:257 , HIS B:281 , ASP B:289 , ASP B:327 , HOH B:465 , MN B:503 , MN B:504 , HOH B:525 , HOH B:1258
BINDING SITE FOR RESIDUE PSJ B 602
07
AC7
SOFTWARE
GLU C:219 , ASP C:254 , HIS C:281 , ASP C:327 , PSJ C:603
BINDING SITE FOR RESIDUE MN C 505
08
AC8
SOFTWARE
HIS C:257 , ASP C:289 , HOH C:488 , HOH C:549 , PSJ C:603
BINDING SITE FOR RESIDUE MN C 506
09
AC9
SOFTWARE
HIS C:101 , TRP C:179 , GLU C:219 , LYS C:221 , ASP C:254 , HIS C:257 , HIS C:281 , ASP C:289 , ASP C:327 , HOH C:463 , HOH C:488 , MN C:505 , MN C:506 , HOH C:549 , PHE D:66
BINDING SITE FOR RESIDUE PSJ C 603
10
BC1
SOFTWARE
GLU D:219 , ASP D:254 , HIS D:281 , ASP D:327 , PSJ D:604
BINDING SITE FOR RESIDUE MN D 507
11
BC2
SOFTWARE
ASP D:254 , HIS D:257 , ASP D:289 , HOH D:442 , HOH D:471 , PSJ D:604
BINDING SITE FOR RESIDUE MN D 508
12
BC3
SOFTWARE
PHE C:66 , ILE C:429 , TRP D:57 , HIS D:101 , TRP D:179 , GLU D:219 , LYS D:221 , ASP D:254 , HIS D:257 , HIS D:281 , ASP D:289 , ASP D:327 , HOH D:442 , HOH D:471 , HOH D:491 , MN D:507 , MN D:508
BINDING SITE FOR RESIDUE PSJ D 604
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_AP_endonuc_2_3m0xD01 (D:92-304)
1b: PFAM_AP_endonuc_2_3m0xD02 (D:92-304)
1c: PFAM_AP_endonuc_2_3m0xD03 (D:92-304)
1d: PFAM_AP_endonuc_2_3m0xD04 (D:92-304)
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Clan
:
TIM_barrel
(694)
Family
:
AP_endonuc_2
(72)
Pseudomonas stutzeri (Pseudomonas perfectomarina)
(6)
1a
AP_endonuc_2-3m0xD01
D:92-304
1b
AP_endonuc_2-3m0xD02
D:92-304
1c
AP_endonuc_2-3m0xD03
D:92-304
1d
AP_endonuc_2-3m0xD04
D:92-304
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Asymmetric Unit 1
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Asym.Unit (297 KB)
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