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3M07
Asym. Unit
Info
Asym.Unit (122 KB)
Biol.Unit 1 (116 KB)
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(1)
Title
:
1.4 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF PUTATIVE ALPHA AMYLASE FROM SALMONELLA TYPHIMURIUM.
Authors
:
G. Minasov, L. Shuvalova, I. Dubrovska, J. Winsor, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date
:
02 Mar 10 (Deposition) - 16 Mar 10 (Release) - 16 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Putative Alpha Amylase, Idp00968, Csgid, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Minasov, L. Shuvalova, I. Dubrovska, J. Winsor, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 4 Angstrom Resolution Crystal Structure Of Putative Alpha Amylase From Salmonella Typhimurium.
To Be Published
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Hetero Components
(5, 14)
Info
All Hetero Components
1a: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
4a: TETRAETHYLENE GLYCOL (PG4a)
4b: TETRAETHYLENE GLYCOL (PG4b)
5a: TRIETHYLENE GLYCOL (PGEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BTB
1
Ligand/Ion
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2
CL
4
Ligand/Ion
CHLORIDE ION
3
MG
6
Ligand/Ion
MAGNESIUM ION
4
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
5
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:297 , GLU A:319 , TRP A:320 , HOH A:632 , HOH A:633 , HOH A:634
BINDING SITE FOR RESIDUE MG A 595
02
AC2
SOFTWARE
GLU A:371 , HOH A:635 , HOH A:636 , HOH A:637 , HOH A:638 , HOH A:639
BINDING SITE FOR RESIDUE MG A 596
03
AC3
SOFTWARE
HOH A:640 , HOH A:641 , HOH A:642 , HOH A:643 , HOH A:644 , HOH A:645
BINDING SITE FOR RESIDUE MG A 597
04
AC4
SOFTWARE
HOH A:646 , HOH A:647 , HOH A:648 , HOH A:649 , HOH A:650 , HOH A:651
BINDING SITE FOR RESIDUE MG A 598
05
AC5
SOFTWARE
HOH A:652 , HOH A:653 , HOH A:654 , HOH A:655 , HOH A:656 , HOH A:657
BINDING SITE FOR RESIDUE MG A 599
06
AC6
SOFTWARE
HOH A:658 , HOH A:659 , HOH A:660 , HOH A:661 , HOH A:662 , HOH A:663
BINDING SITE FOR RESIDUE MG A 600
07
AC7
SOFTWARE
GLN A:390 , LEU A:404 , ILE A:405 , HOH A:723 , HOH A:787 , HOH A:867
BINDING SITE FOR RESIDUE CL A 601
08
AC8
SOFTWARE
TRP A:110 , HOH A:659 , HOH A:1035
BINDING SITE FOR RESIDUE CL A 602
09
AC9
SOFTWARE
SER A:298 , ASP A:322 , ARG A:373 , HOH A:632
BINDING SITE FOR RESIDUE CL A 603
10
BC1
SOFTWARE
ARG A:283 , PRO A:290 , ILE A:291 , HOH A:783 , HOH A:999
BINDING SITE FOR RESIDUE CL A 604
11
BC2
SOFTWARE
TYR A:163 , HIS A:203 , TRP A:227 , ASP A:261 , ALA A:262 , GLU A:296 , HIS A:392 , ASP A:393 , HOH A:641 , HOH A:644 , HOH A:976 , HOH A:1199 , HOH A:1200
BINDING SITE FOR RESIDUE BTB A 605
12
BC3
SOFTWARE
LYS A:39 , PHE A:331 , ALA A:332 , THR A:333 , ALA A:408 , ARG A:412 , HOH A:1215
BINDING SITE FOR RESIDUE PG4 A 606
13
BC4
SOFTWARE
HIS A:273 , ARG A:299 , SER A:303 , HOH A:829
BINDING SITE FOR RESIDUE PG4 A 607
14
BC5
SOFTWARE
TYR A:14 , ASP A:94 , HOH A:627 , HOH A:657
BINDING SITE FOR RESIDUE PGE A 608
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Info
all CATH domains
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_DUF3459_3m07A01 (A:501-586)
2a: PFAM_Alpha_amylase_3m07A02 (A:229-439)
2b: PFAM_Alpha_amylase_3m07A03 (A:229-439)
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Clans
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Organisms
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Clan
:
GHD
(106)
Family
:
DUF3459
(5)
Salmonella typhimurium
(1)
1a
DUF3459-3m07A01
A:501-586
Clan
:
Glyco_hydro_tim
(488)
Family
:
Alpha-amylase
(138)
Salmonella typhimurium
(1)
2a
Alpha-amylase-3m07A02
A:229-439
2b
Alpha-amylase-3m07A03
A:229-439
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Chain A
Asymmetric Unit 1
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