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3LZZ
Asym. Unit
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Asym.Unit (62 KB)
Biol.Unit 1 (58 KB)
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(1)
Title
:
CRYSTAL STRUCTURES OF CUPIN SUPERFAMILY BBDUF985 FROM BRANCHIOSTOMA BELCHERI TSINGTAUENSE IN APO AND GDP-BOUND FORMS
Authors
:
Y. Du, Y. -X. He, G. Saren, X. Zhang, S. -C. Zhang, Y. Chen, C. -Z. Zhou
Date
:
02 Mar 10 (Deposition) - 02 Jun 10 (Release) - 02 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Beta Barrel, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
C. Z. Zou, Y. Du, Y. -X. He, G. Saren, X. Zhang, Y. Chen, S. -C. Zhang
Crystal Structures Of The Apo And Gdp-Bound Forms Of A Cupin-Like Protein Bbduf985 From Branchiostoma Belcheri Tsingtauense
Proteins 2010
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
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No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
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Sites
(4, 4)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:24 , PRO A:25 , PHE A:31 , GLU A:33 , THR A:54 , ILE A:56 , PHE A:140 , ACT A:174 , HOH A:199 , HOH A:251
BINDING SITE FOR RESIDUE GDP A 173
2
AC2
SOFTWARE
HIS B:24 , PRO B:25 , PHE B:31 , GLU B:33 , ILE B:56 , PHE B:140 , PHE B:142 , ACT B:174 , HOH B:180 , HOH B:211 , HOH B:227
BINDING SITE FOR RESIDUE GDP B 173
3
AC3
SOFTWARE
HIS B:24 , ASP B:66 , HIS B:69 , GLU B:75 , PHE B:122 , GDP B:173
BINDING SITE FOR RESIDUE ACT B 174
4
AC4
SOFTWARE
HIS A:24 , ASP A:66 , HIS A:69 , GLU A:75 , GLN A:124 , GDP A:173
BINDING SITE FOR RESIDUE ACT A 174
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SAPs(SNPs)/Variants
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3lzza_ (A:)
1b: SCOP_d3lzzb_ (B:)
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Class
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All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
RmlC-like cupins
(220)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Branchiostoma belcheri [TaxId: 155462]
(2)
1a
d3lzza_
A:
1b
d3lzzb_
B:
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Cupin_5_3lzzB01 (B:12-149)
1b: PFAM_Cupin_5_3lzzB02 (B:12-149)
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Clan
:
Cupin
(179)
Family
:
Cupin_5
(3)
Branchiostoma belcheri tsingtauense
(2)
1a
Cupin_5-3lzzB01
B:12-149
1b
Cupin_5-3lzzB02
B:12-149
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Asymmetric Unit 1
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