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3LZF
Asym. Unit
Info
Asym.Unit (154 KB)
Biol.Unit 1 (430 KB)
Biol.Unit 2 (242 KB)
Biol.Unit 3 (67 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FAB 2D1 IN COMPLEX WITH THE 1918 INFLUENZA VIRUS HEMAGGLUTININ
Authors
:
D. C. Ekiert, I. A. Wilson
Date
:
01 Mar 10 (Deposition) - 07 Apr 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,H,L
Biol. Unit 1: A,B,H,L (3x)
Biol. Unit 2: A,B (3x)
Biol. Unit 3: H,L (1x)
Keywords
:
Hemagglutinin, Fab, Neutralizing Antibodies, Antibody, Pandemic Flu, Swine Flu, Envelope Protein, Fusion Protein, Glycoprotein, Antigen, Virion, Viral Protein-Immune System Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
R. Xu, D. C. Ekiert, J. C. Krause, R. Hai, J. E. Crowe, I. A. Wilson
Structural Basis Of Preexisting Immunity To The 2009 H1N1 Pandemic Influenza Virus.
Science V. 328 357 2010
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-D-MANNOSE (MANa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
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No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
7
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:21
BINDING SITE FOR RESIDUE NAG A 401
2
AC2
SOFTWARE
ASN A:33 , NAG A:502
BINDING SITE FOR RESIDUE NAG A 501
3
AC3
SOFTWARE
NAG A:501
BINDING SITE FOR RESIDUE NAG A 502
4
AC4
SOFTWARE
ASN A:73 , GLU A:75 , GLU A:94 , ASN A:95 , CYS A:97 , ARG A:224 , NAG A:602
BINDING SITE FOR RESIDUE NAG A 601
5
AC5
SOFTWARE
NAG A:601 , BMA A:603
BINDING SITE FOR RESIDUE NAG A 602
6
AC6
SOFTWARE
NAG A:602 , MAN A:604
BINDING SITE FOR RESIDUE BMA A 603
7
AC7
SOFTWARE
ARG A:224 , BMA A:603
BINDING SITE FOR RESIDUE MAN A 604
8
AC8
SOFTWARE
ASN A:289 , NAG A:702
BINDING SITE FOR RESIDUE NAG A 701
9
AC9
SOFTWARE
NAG A:701
BINDING SITE FOR RESIDUE NAG A 702
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d3lzfl1 (L:2-107)
2a: SCOP_d3lzfl2 (L:108-211)
3a: SCOP_d3lzfa_ (A:)
4a: SCOP_d3lzfb_ (B:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d3lzfl1
L:2-107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
2a
d3lzfl2
L:108-211
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
3a
d3lzfa_
A:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
automated matches
(59)
Influenza A virus [TaxId: 59375]
(1)
4a
d3lzfb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Hemagglutinin_3lzfB01 (B:1-173)
1b: PFAM_Hemagglutinin_3lzfB02 (B:1-173)
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Clans
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(
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Organisms
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)
(
)
Clan
:
no clan defined [family: Hemagglutinin]
(58)
Family
:
Hemagglutinin
(58)
Influenza A virus (strain A/Brevig Mission/1/1918 H1N1) (Influenza A virus (strain A/South Carolina/
(5)
1a
Hemagglutinin-3lzfB01
B:1-173
1b
Hemagglutinin-3lzfB02
B:1-173
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Asymmetric Unit 1
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Asym.Unit (154 KB)
Header - Asym.Unit
Biol.Unit 1 (430 KB)
Header - Biol.Unit 1
Biol.Unit 2 (242 KB)
Header - Biol.Unit 2
Biol.Unit 3 (67 KB)
Header - Biol.Unit 3
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