PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3LZB
Biol. Unit 4
Info
Asym.Unit (196 KB)
Biol.Unit 1 (48 KB)
Biol.Unit 2 (48 KB)
Biol.Unit 3 (48 KB)
Biol.Unit 4 (47 KB)
Biol.Unit 5 (5 KB)
Biol.Unit 6 (5 KB)
Biol.Unit 7 (5 KB)
Biol.Unit 8 (5 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
EGFR KINASE DOMAIN COMPLEXED WITH AN IMIDAZO[2,1-B]THIAZOLE INHIBITOR
Authors
:
K. K. Swinger
Date
:
01 Mar 10 (Deposition) - 02 Mar 11 (Release) - 16 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Keywords
:
Epidermal Growth Factor Kinase Domain, Multitargeted Small Molecule Kinase Inhibitor, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. D. Fidanze, S. A. Erickson, G. T. Wang, R. Mantei, R. F. Clark, B. K. Sorensen, N. Y. Bamaung, P. Kovar, E. F. Johnson, K. K. Swinger, K. D. Stewart, Q. Zhang, L. A. Tucker, W. N. Pappano, J. L. Wilsbacher, J. Wang, G. S. Sheppard, R. L. Bell, S. K. Davidsen, R. D. Hubbard
Imidazo[2, 1-B]Thiazoles: Multitargeted Inhibitors Of Both The Insulin-Like Growth Factor Receptor And Members Of The Epidermal Growth Factor Family Of Receptor Tyrosine Kinases
Bioorg. Med. Chem. Lett. V. 20 2452 2010
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: N-[3-(5-{2-[(4-MORPHOLIN-4-YLPHENY... (ITIa)
1b: N-[3-(5-{2-[(4-MORPHOLIN-4-YLPHENY... (ITIb)
1c: N-[3-(5-{2-[(4-MORPHOLIN-4-YLPHENY... (ITIc)
1d: N-[3-(5-{2-[(4-MORPHOLIN-4-YLPHENY... (ITId)
2a: (UNKa)
2aa: (UNKaa)
2ab: (UNKab)
2ac: (UNKac)
2ad: (UNKad)
2ae: (UNKae)
2af: (UNKaf)
2b: (UNKb)
2c: (UNKc)
2d: (UNKd)
2e: (UNKe)
2f: (UNKf)
2g: (UNKg)
2h: (UNKh)
2i: (UNKi)
2j: (UNKj)
2k: (UNKk)
2l: (UNKl)
2m: (UNKm)
2n: (UNKn)
2o: (UNKo)
2p: (UNKp)
2q: (UNKq)
2r: (UNKr)
2s: (UNKs)
2t: (UNKt)
2u: (UNKu)
2v: (UNKv)
2w: (UNKw)
2x: (UNKx)
2y: (UNKy)
2z: (UNKz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ITI
1
Ligand/Ion
N-[3-(5-{2-[(4-MORPHOLIN-4-YLPHENYL)AMINO]PYRIMIDIN-4-YL}IMIDAZO[2,1-B][1,3]THIAZOL-6-YL)PHENYL]-2-PHENYLACETAMIDE
2
UNK
-1
Mod. Amino Acid
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
LEU D:694 , VAL D:702 , ALA D:719 , LYS D:721 , MET D:742 , CYS D:751 , LEU D:753 , LEU D:764 , THR D:766 , GLN D:767 , LEU D:768 , MET D:769 , PRO D:770 , GLY D:772 , LEU D:820 , THR D:830 , PHE D:832 , LEU D:834
BINDING SITE FOR RESIDUE ITI D 1
[
close Site info
]
SAPs(SNPs)/Variants
(22, 22)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_026084 (E685A, chain D, )
02: VAR_069498 (E685G, chain D, )
03: VAR_026085 (E685K, chain D, )
04: VAR_026086 (G695A, chain D, )
05: VAR_026087 (G695C, chain D, )
06: VAR_026088 (G695D, chain D, )
07: VAR_019297 (G695S, chain D, )
08: VAR_026089 (G700S, chain D, )
09: VAR_026090 (E710K, chain D, )
10: VAR_026093 (L723F, chain D, )
11: VAR_026095 (R724P, chain D, )
12: VAR_069502 (S744I, chain D, )
13: VAR_069503 (V745M, chain D, )
14: VAR_026097 (Q763R, chain D, )
15: VAR_026098 (T766M, chain D, )
16: VAR_026099 (L809V, chain D, )
17: VAR_026100 (V810L, chain D, )
18: VAR_069504 (H811L, chain D, )
19: VAR_069505 (L814V, chain D, )
20: VAR_026101 (L834M, chain D, )
21: VAR_019298 (L834R, chain D, )
22: VAR_019299 (R938G, chain D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
02
UniProt
VAR_026084
E
709
A
EGFR_HUMAN
Unclassified
---
D
E
685
A
03
UniProt
VAR_069498
E
709
G
EGFR_HUMAN
Unclassified
---
D
E
685
G
04
UniProt
VAR_026085
E
709
K
EGFR_HUMAN
Unclassified
---
D
E
685
K
05
UniProt
VAR_026086
G
719
A
EGFR_HUMAN
Unclassified
---
D
G
695
A
06
UniProt
VAR_026087
G
719
C
EGFR_HUMAN
Polymorphism
28929495
D
G
695
C
07
UniProt
VAR_026088
G
719
D
EGFR_HUMAN
Unclassified
---
D
G
695
D
08
UniProt
VAR_019297
G
719
S
EGFR_HUMAN
Unclassified
---
D
G
695
S
09
UniProt
VAR_026089
G
724
S
EGFR_HUMAN
Unclassified
---
D
G
700
S
10
UniProt
VAR_026090
E
734
K
EGFR_HUMAN
Unclassified
---
D
E
710
K
11
UniProt
VAR_026093
L
747
F
EGFR_HUMAN
Unclassified
---
D
L
723
F
12
UniProt
VAR_026095
R
748
P
EGFR_HUMAN
Unclassified
---
D
R
724
P
13
UniProt
VAR_069502
S
768
I
EGFR_HUMAN
Polymorphism
121913465
D
S
744
I
14
UniProt
VAR_069503
V
769
M
EGFR_HUMAN
Polymorphism
147149347
D
V
745
M
15
UniProt
VAR_026097
Q
787
R
EGFR_HUMAN
Unclassified
---
D
Q
763
R
16
UniProt
VAR_026098
T
790
M
EGFR_HUMAN
Unclassified
---
D
T
766
M
17
UniProt
VAR_026099
L
833
V
EGFR_HUMAN
Unclassified
---
D
L
809
V
18
UniProt
VAR_026100
V
834
L
EGFR_HUMAN
Unclassified
---
D
V
810
L
19
UniProt
VAR_069504
H
835
L
EGFR_HUMAN
Unclassified
---
D
H
811
L
20
UniProt
VAR_069505
L
838
V
EGFR_HUMAN
Unclassified
---
D
L
814
V
21
UniProt
VAR_026101
L
858
M
EGFR_HUMAN
Unclassified
---
D
L
834
M
22
UniProt
VAR_019298
L
858
R
EGFR_HUMAN
Polymorphism
121434568
D
L
834
R
23
UniProt
VAR_019299
R
962
G
EGFR_HUMAN
Polymorphism
17337451
D
R
938
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (D:694-721)
2: PROTEIN_KINASE_TYR (D:809-821)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
EGFR_HUMAN
718-745
1
-
-
-
D:694-721
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
EGFR_HUMAN
833-845
1
-
-
-
D:809-821
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3lzba_ (A:)
1b: SCOP_d3lzbb_ (B:)
1c: SCOP_d3lzbc_ (C:)
1d: SCOP_d3lzbd_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
automated matches
(529)
Protein domain
:
automated matches
(529)
Human (Homo sapiens) [TaxId: 9606]
(438)
1a
d3lzba_
A:
1b
d3lzbb_
B:
1c
d3lzbc_
C:
1d
d3lzbd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Pkinase_Tyr_3lzbD01 (D:688-944)
1b: PFAM_Pkinase_Tyr_3lzbD02 (D:688-944)
1c: PFAM_Pkinase_Tyr_3lzbD03 (D:688-944)
1d: PFAM_Pkinase_Tyr_3lzbD04 (D:688-944)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase_Tyr
(229)
Homo sapiens (Human)
(202)
1a
Pkinase_Tyr-3lzbD01
D:688-944
1b
Pkinase_Tyr-3lzbD02
D:688-944
1c
Pkinase_Tyr-3lzbD03
D:688-944
1d
Pkinase_Tyr-3lzbD04
D:688-944
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (196 KB)
Header - Asym.Unit
Biol.Unit 1 (48 KB)
Header - Biol.Unit 1
Biol.Unit 2 (48 KB)
Header - Biol.Unit 2
Biol.Unit 3 (48 KB)
Header - Biol.Unit 3
Biol.Unit 4 (47 KB)
Header - Biol.Unit 4
Biol.Unit 5 (5 KB)
Header - Biol.Unit 5
Biol.Unit 6 (5 KB)
Header - Biol.Unit 6
Biol.Unit 7 (5 KB)
Header - Biol.Unit 7
Biol.Unit 8 (5 KB)
Header - Biol.Unit 8
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3LZB
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
