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3LXJ
Asym. Unit
Info
Asym.Unit (190 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (47 KB)
Biol.Unit 3 (47 KB)
Biol.Unit 4 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN AAA DOMAIN CONTAINING 2B (ATAD2B)
Authors
:
P. Filippakopoulos, T. Keates, S. Picaud, O. Fedorov, T. Krojer, M. Vol J. Muniz, A. C. W. Pike, F. Von Delft, C. H. Arrowsmith, A. Edwards, J. W C. Bountra, S. Knapp, Structural Genomics Consortium (Sgc)
Date
:
25 Feb 10 (Deposition) - 09 Mar 10 (Release) - 11 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.33
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Atpase Family, Aaa Domain Containing 2B, Atad2B, Bromodomain, Structural Genomics Consortium, Sgc, Atp-Binding, Nucleotide- Binding, Phosphoprotein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Filippakopoulos, S. Picaud, M. Mangos, T. Keates, J. P. Lambert, D. Barsyte-Lovejoy, I. Felletar, R. Volkmer, S. Muller, T. Pawson, A. C. Gingras, C. H. Arrowsmith, S. Knapp
Histone Recognition And Large-Scale Structural Analysis Of The Human Bromodomain Family.
Cell(Cambridge, Mass. ) V. 149 214 2012
[
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: ISOPROPYL ALCOHOL (IPAa)
1b: ISOPROPYL ALCOHOL (IPAb)
1c: ISOPROPYL ALCOHOL (IPAc)
1d: ISOPROPYL ALCOHOL (IPAd)
1e: ISOPROPYL ALCOHOL (IPAe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IPA
5
Ligand/Ion
ISOPROPYL ALCOHOL
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU B:1066 , ASP B:1068
BINDING SITE FOR RESIDUE IPA B 3
2
AC2
SOFTWARE
GLU D:1066 , ASP D:1068
BINDING SITE FOR RESIDUE IPA D 1
3
AC3
SOFTWARE
ARG D:1049
BINDING SITE FOR RESIDUE IPA D 5
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: BROMODOMAIN_2 (A:975-1038,B:975-1038,C:975-1038,D...)
2: BROMODOMAIN_1 (A:980-1037,B:980-1037,C:980-1037,D...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BROMODOMAIN_2
PS50014
Bromodomain profile.
ATD2B_HUMAN
975-1038
4
A:975-1038
B:975-1038
C:975-1038
D:975-1038
2
BROMODOMAIN_1
PS00633
Bromodomain signature.
ATD2B_HUMAN
980-1037
4
A:980-1037
B:980-1037
C:980-1037
D:980-1037
[
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]
Exons
(3, 12)
Info
All Exons
Exon 1.31b (A:951-991 | B:951-991 | C:951-991 ...)
Exon 1.32 (A:992-1045 | B:992-1045 | C:992-10...)
Exon 1.33 (A:1045-1085 | B:1045-1085 | C:1045...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.29/1.31b
2: Boundary 1.31b/1.32
3: Boundary 1.32/1.33
4: Boundary 1.33/1.34
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000238789
1a
ENSE00001558735
chr2:
24149984-24149425
560
ATD2B_HUMAN
1-72
72
0
-
-
1.2
ENST00000238789
2
ENSE00001607011
chr2:
24118840-24118689
152
ATD2B_HUMAN
73-123
51
0
-
-
1.3
ENST00000238789
3
ENSE00001707339
chr2:
24111269-24111220
50
ATD2B_HUMAN
123-140
18
0
-
-
1.4
ENST00000238789
4
ENSE00001681974
chr2:
24110855-24110702
154
ATD2B_HUMAN
140-191
52
0
-
-
1.5
ENST00000238789
5
ENSE00001654691
chr2:
24108699-24108597
103
ATD2B_HUMAN
191-225
35
0
-
-
1.6
ENST00000238789
6
ENSE00001741373
chr2:
24107743-24107635
109
ATD2B_HUMAN
226-262
37
0
-
-
1.8
ENST00000238789
8
ENSE00001686370
chr2:
24103625-24103509
117
ATD2B_HUMAN
262-301
40
0
-
-
1.9
ENST00000238789
9
ENSE00001705994
chr2:
24098774-24098699
76
ATD2B_HUMAN
301-326
26
0
-
-
1.10b
ENST00000238789
10b
ENSE00001654093
chr2:
24092631-24092533
99
ATD2B_HUMAN
326-359
34
0
-
-
1.12a
ENST00000238789
12a
ENSE00001602331
chr2:
24090816-24090705
112
ATD2B_HUMAN
359-396
38
0
-
-
1.13
ENST00000238789
13
ENSE00001789499
chr2:
24087794-24087679
116
ATD2B_HUMAN
397-435
39
0
-
-
1.14
ENST00000238789
14
ENSE00001766749
chr2:
24086425-24086251
175
ATD2B_HUMAN
435-493
59
0
-
-
1.15
ENST00000238789
15
ENSE00001768269
chr2:
24080373-24080285
89
ATD2B_HUMAN
494-523
30
0
-
-
1.17
ENST00000238789
17
ENSE00001785541
chr2:
24056948-24056789
160
ATD2B_HUMAN
523-576
54
0
-
-
1.19
ENST00000238789
19
ENSE00001800581
chr2:
24051809-24051719
91
ATD2B_HUMAN
577-607
31
0
-
-
1.21b
ENST00000238789
21b
ENSE00001663711
chr2:
24046439-24046128
312
ATD2B_HUMAN
607-711
105
0
-
-
1.22a
ENST00000238789
22a
ENSE00001287157
chr2:
24042752-24042617
136
ATD2B_HUMAN
711-756
46
0
-
-
1.24
ENST00000238789
24
ENSE00001034632
chr2:
24033372-24033186
187
ATD2B_HUMAN
756-818
63
0
-
-
1.28
ENST00000238789
28
ENSE00000721282
chr2:
24021193-24021008
186
ATD2B_HUMAN
819-880
62
0
-
-
1.29
ENST00000238789
29
ENSE00000721276
chr2:
24011517-24011382
136
ATD2B_HUMAN
881-926
46
0
-
-
1.31b
ENST00000238789
31b
ENSE00001487247
chr2:
24009093-24008897
197
ATD2B_HUMAN
926-991
66
4
A:951-991
B:951-991
C:951-991
D:951-991
41
41
41
41
1.32
ENST00000238789
32
ENSE00000721263
chr2:
24005898-24005739
160
ATD2B_HUMAN
992-1045
54
4
A:992-1045
B:992-1045
C:992-1045
D:992-1045
54
54
54
54
1.33
ENST00000238789
33
ENSE00001549457
chr2:
23988498-23988376
123
ATD2B_HUMAN
1045-1086
42
4
A:1045-1085
B:1045-1085
C:1045-1085
D:1045-1084
41
41
41
40
1.34
ENST00000238789
34
ENSE00000721253
chr2:
23985216-23985079
138
ATD2B_HUMAN
1086-1132
47
0
-
-
1.35
ENST00000238789
35
ENSE00000808809
chr2:
23980971-23980288
684
ATD2B_HUMAN
1132-1360
229
0
-
-
1.36b
ENST00000238789
36b
ENSE00000808808
chr2:
23977644-23977517
128
ATD2B_HUMAN
1360-1402
43
0
-
-
1.37b
ENST00000238789
37b
ENSE00000808807
chr2:
23977177-23977049
129
ATD2B_HUMAN
1403-1445
43
0
-
-
1.38c
ENST00000238789
38c
ENSE00000721122
chr2:
23974957-23971534
3424
ATD2B_HUMAN
1446-1458
13
0
-
-
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3lxja_ (A:)
1b: SCOP_d3lxjb_ (B:)
1c: SCOP_d3lxjc_ (C:)
1d: SCOP_d3lxjd_ (D:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Bromodomain
(203)
Family
:
automated matches
(169)
Protein domain
:
automated matches
(169)
Human (Homo sapiens) [TaxId: 9606]
(162)
1a
d3lxja_
A:
1b
d3lxjb_
B:
1c
d3lxjc_
C:
1d
d3lxjd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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