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3LX2
Asym. Unit
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Asym.Unit (126 KB)
Biol.Unit 1 (120 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF PCNA FROM THERMOCOCCUS KODAKARAENSIS TK0582
Authors
:
J. E. Ladner, Z. Kelman, M. Pan
Date
:
24 Feb 10 (Deposition) - 26 Jan 11 (Release) - 20 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Pcna, Dna Processivity Factor, Trimer, Toroidal, Dna Replication, Dna-Binding, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. E. Ladner, M. Pan, J. Hurwitz, Z. Kelman
Crystal Structures Of Two Active Proliferating Cell Nuclear Antigens (Pcnas) Encoded By Thermococcus Kodakaraensis.
Proc. Natl. Acad. Sci. Usa V. 108 2711 2011
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
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No.
Name
Count
Type
Full Name
1
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:213 , ASP A:214
BINDING SITE FOR RESIDUE SO4 A 260
2
AC2
SOFTWARE
SER A:9 , ARG A:11 , SER A:85 , ARG A:86 , HOH A:268
BINDING SITE FOR RESIDUE SO4 A 261
3
AC3
SOFTWARE
GLU A:4 , VAL A:90
BINDING SITE FOR RESIDUE SO4 A 262
4
AC4
SOFTWARE
ALA B:213 , ASP B:214
BINDING SITE FOR RESIDUE SO4 B 260
5
AC5
SOFTWARE
SER B:9 , ARG B:11 , SER B:85 , HOH B:278
BINDING SITE FOR RESIDUE SO4 B 261
6
AC6
SOFTWARE
SER C:9 , SER C:85
BINDING SITE FOR RESIDUE SO4 C 260
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: PCNA_1 (A:35-58,B:35-58,C:35-58)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PCNA_1
PS01251
Proliferating cell nuclear antigen signature 1.
PCNA2_THEKO
35-58
3
A:35-58
B:35-58
C:35-58
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3lx2a1 (A:2-117)
1b: SCOP_d3lx2a2 (A:118-248)
1c: SCOP_d3lx2b1 (B:2-117)
1d: SCOP_d3lx2b2 (B:118-247)
1e: SCOP_d3lx2c1 (C:2-117)
1f: SCOP_d3lx2c2 (C:118-247)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
automated matches
(17)
Protein domain
:
automated matches
(17)
Thermococcus kodakarensis [TaxId: 311400]
(1)
1a
d3lx2a1
A:2-117
1b
d3lx2a2
A:118-248
1c
d3lx2b1
B:2-117
1d
d3lx2b2
B:118-247
1e
d3lx2c1
C:2-117
1f
d3lx2c2
C:118-247
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (126 KB)
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