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3LWK
Biol. Unit 1
Info
Asym.Unit (43 KB)
Biol.Unit 1 (72 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN BETA-CRYSTALLIN A4 (CRYBA4)
Authors
:
A. Chaikuad, N. Shafqat, T. Krojer, W. W. Yue, R. Cocking, M. Vollmar, J. R. C. Muniz, A. C. W. Pike, C. H. Arrowsmith, J. Weigelt, A. M. Edwards C. Bountra, U. Oppermann, Structural Genomics Consortium (Sgc)
Date
:
24 Feb 10 (Deposition) - 16 Mar 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Structural Protein, Beta-Crystallin, Structural Genomics Consortium, Sgc, Cataract, Disease Mutation, Eye Lens Protein, Microphthalmia, Oxidation, Phosphoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Chaikuad, N. Shafqat, T. Krojer, W. W. Yue, R. Cocking, M. Vollmar, J. R. C. Muniz, A. C. W. Pike, F. Von Delft, C. H. Arrowsmith, J. Weigelt A. M. Edwards, C. Bountra, U. Oppermann
Crystal Structure Of Human Beta-Crystallin A4 (Cryba4)
To Be Published
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
2a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
10
Ligand/Ion
GLYCEROL
2
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:25 , ARG A:26 , PHE A:41 , HOH A:216
BINDING SITE FOR RESIDUE PO4 A 1
2
AC2
SOFTWARE
ILE A:68 , VAL A:150 , GLY A:156 , TYR A:157 , ARG A:158 , GLN A:161 , ARG A:192 , HOH A:214 , HOH A:218
BINDING SITE FOR RESIDUE GOL A 2
3
AC3
SOFTWARE
ASP A:18 , GLU A:19 , GLY A:24 , ARG A:25 , HOH A:295 , HOH A:322
BINDING SITE FOR RESIDUE GOL A 3
4
AC4
SOFTWARE
THR A:108 , PHE A:110 , GLU A:121 , HIS A:145 , HOH A:370 , HOH A:371
BINDING SITE FOR RESIDUE GOL A 4
5
AC5
SOFTWARE
LYS A:13 , ARG A:26 , GLU A:28 , LEU A:50 , HOH A:202 , HOH A:274 , HOH A:341
BINDING SITE FOR RESIDUE GOL A 5
6
AC6
SOFTWARE
HIS A:59 , GLY A:64 , HIS A:143 , HIS A:145 , HOH A:250
BINDING SITE FOR RESIDUE GOL A 6
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_033824 (V36M, chain A, )
2: VAR_029528 (L69P, chain A, )
3: VAR_029529 (F94S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033824
V
36
M
CRBA4_HUMAN
Polymorphism
35520672
A
V
36
M
2
UniProt
VAR_029528
L
69
P
CRBA4_HUMAN
Disease (CTRCT23)
---
A
L
69
P
3
UniProt
VAR_029529
F
94
S
CRBA4_HUMAN
Disease (CTRCT23)
---
A
F
94
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: CRYSTALLIN_BETA_GAMMA (A:147-195)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CRYSTALLIN_BETA_GAMMA
PS50915
Crystallins beta and gamma 'Greek key' motif profile.
CRBA4_HUMAN
12-51
52-98
105-146
147-195
8
A:12-51
A:52-98
A:105-146
A:147-195
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3lwka_ (A:)
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Classes
(
)
(
)
Folds
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)
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)
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)
Protein Domains
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(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
gamma-Crystallin-like
(65)
Superfamily
:
gamma-Crystallin-like
(65)
Family
:
automated matches
(25)
Protein domain
:
automated matches
(25)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d3lwka_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Crystall_3lwkA01 (A:106-194)
1b: PFAM_Crystall_3lwkA02 (A:106-194)
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Clans
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
gCrystallin
(22)
Family
:
Crystall
(21)
Homo sapiens (Human)
(8)
1a
Crystall-3lwkA01
A:106-194
1b
Crystall-3lwkA02
A:106-194
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Chain A
Asymmetric Unit 1
Asymmetric Unit 2
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