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3LWB
Asym. Unit
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Asym.Unit (204 KB)
Biol.Unit 1 (197 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APO D-ALANINE:D-ALANINE LIGASE (DDL) FROM MYCOBACTERIUM TUBERCULOSIS
Authors
:
J. B. Bruning, A. C. Murillo, O. Chacon, R. G. Barletta, J. C. Sacchettin Structural Genomics Consortium (Tbsgc)
Date
:
23 Feb 10 (Deposition) - 09 Mar 10 (Release) - 05 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
D-Alanine--D-Alanine Ligase, Ddl, D-Alanyl--D-Alanine Ligase, Rv2981C, D-Alanine, Structural Genomics, Tb Structural Genomics Consortium, Tbsgc, Atp-Binding, Cell Shape, Cell Wall Biogenesis, Degradation, Ligase, Magnesium, Manganese, Metal-Binding, Nucleotide-Binding, Peptidoglycan Synthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Bruning, A. C. Murillo, O. Chacon, R. G. Barletta, J. C. Sacchettini
Structure Of The Mycobacterium Tuberculosis D-Alanine:D-Alanine Ligase, A Target Of The Antituberculosi Drug D-Cycloserine.
Antimicrob. Agents Chemother. V. 55 291 2011
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: NITRATE ION (NO3a)
1b: NITRATE ION (NO3b)
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No.
Name
Count
Type
Full Name
1
NO3
2
Ligand/Ion
NITRATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:316 , PRO A:335 , GLY A:336 , SER A:341 , MET A:342 , TYR A:343
BINDING SITE FOR RESIDUE NO3 A 374
2
AC2
SOFTWARE
ARG B:316 , PRO B:335 , GLY B:336 , MET B:342 , TYR B:343
BINDING SITE FOR RESIDUE NO3 B 374
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: DALA_DALA_LIGASE_1 (A:118-129,B:118-129,A:118-129,B:11...)
2: DALA_DALA_LIGASE_2 (A:309-336,B:309-336,A:309-336,B:30...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DALA_DALA_LIGASE_1
PS00843
D-alanine--D-alanine ligase signature 1.
DDL_MYCTO
118-129
2
A:118-129
B:118-129
DDL_MYCTU
118-129
2
A:118-129
B:118-129
2
DALA_DALA_LIGASE_2
PS00844
D-alanine--D-alanine ligase signature 2.
DDL_MYCTO
309-336
2
A:309-336
B:309-336
DDL_MYCTU
309-336
2
A:309-336
B:309-336
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3lwba2 (A:151-368)
1b: SCOP_d3lwbb2 (B:151-373)
2a: SCOP_d3lwba1 (A:7-150)
2b: SCOP_d3lwbb1 (B:10-150)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
automated matches
(42)
Protein domain
:
automated matches
(42)
Mycobacterium tuberculosis [TaxId: 1773]
(1)
1a
d3lwba2
A:151-368
1b
d3lwbb2
B:151-373
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
automated matches
(45)
Protein domain
:
automated matches
(45)
Mycobacterium tuberculosis [TaxId: 1773]
(1)
2a
d3lwba1
A:7-150
2b
d3lwbb1
B:10-150
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CATH Domains
(0, 0)
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Dala_Dala_lig_C_3lwbB01 (B:158-363)
1b: PFAM_Dala_Dala_lig_C_3lwbB02 (B:158-363)
2a: PFAM_Dala_Dala_lig_N_3lwbB03 (B:11-141)
2b: PFAM_Dala_Dala_lig_N_3lwbB04 (B:11-141)
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Clan
:
ATP-grasp
(83)
Family
:
Dala_Dala_lig_C
(12)
Mycobacterium tuberculosis
(1)
1a
Dala_Dala_lig_C-3lwbB01
B:158-363
1b
Dala_Dala_lig_C-3lwbB02
B:158-363
Clan
:
no clan defined [family: Dala_Dala_lig_N]
(12)
Family
:
Dala_Dala_lig_N
(12)
Mycobacterium tuberculosis
(1)
2a
Dala_Dala_lig_N-3lwbB03
B:11-141
2b
Dala_Dala_lig_N-3lwbB04
B:11-141
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Asymmetric Unit 1
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Asym.Unit (204 KB)
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