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Getting 'Exon' information from database.
3LW1
Asym. Unit
Info
Asym.Unit (112 KB)
Biol.Unit 1 (208 KB)
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(1)
Title
:
BINARY COMPLEX OF 14-3-3 SIGMA AND P53 PT387-PEPTIDE
Authors
:
B. Schumacher, J. Mondry, P. Thiel, M. Weyand, C. Ottmann
Date
:
23 Feb 10 (Deposition) - 23 Mar 10 (Release) - 21 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.28
Chains
:
Asym. Unit : A,P
Biol. Unit 1: A,P (2x)
Keywords
:
Adapter Protein, Cytoplasm, Nucleus, Phosphoprotein, Peptide Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Schumacher, J. Mondry, P. Thiel, M. Weyand, C. Ottmann
Structure Of The P53 C-Terminus Bound To 14-3-3: Implications For Stabilization Of The P53 Tetramer
Febs Lett. V. 584 1443 2010
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Hetero Components
(5, 7)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: S-HYDROXYCYSTEINE (CSOa)
3a: GLYCEROL (GOLa)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
5a: PHOSPHOTHREONINE (TPOa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
CSO
1
Mod. Amino Acid
S-HYDROXYCYSTEINE
3
GOL
1
Ligand/Ion
GLYCEROL
4
MG
3
Ligand/Ion
MAGNESIUM ION
5
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:35 , GLU A:110 , GLU A:188 , HOH A:510 , HOH A:608 , HOH A:639
BINDING SITE FOR RESIDUE MG A 249
2
AC2
SOFTWARE
GLU A:89 , HOH A:300 , HOH A:314 , HOH A:328 , HOH A:329 , HOH A:372
BINDING SITE FOR RESIDUE MG A 250
3
AC3
SOFTWARE
GLU A:2 , HOH A:274 , HOH A:330 , HOH A:378
BINDING SITE FOR RESIDUE MG A 251
4
AC4
SOFTWARE
LYS A:9 , HOH A:448 , HOH A:501
BINDING SITE FOR RESIDUE CL A 252
5
AC5
SOFTWARE
GLY A:-4 , ALA A:-3 , GLU A:76 , GLY A:78 , PRO A:79 , ARG A:82 , HOH A:361 , HOH A:446
BINDING SITE FOR RESIDUE GOL A 253
[
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048095 (M155I, chain A, )
2: VAR_045573 (F385L, chain P, )
3: VAR_045574 (G389W, chain P, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048095
M
155
I
1433S_HUMAN
Polymorphism
11542705
A
M
155
I
2
UniProt
VAR_045573
F
385
L
P53_HUMAN
Unclassified
---
P
F
385
L
3
UniProt
VAR_045574
G
389
W
P53_HUMAN
Unclassified
---
P
G
389
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: 1433_1 (A:41-51)
2: 1433_2 (A:213-231)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
1433_1
PS00796
14-3-3 proteins signature 1.
1433S_HUMAN
41-51
1
A:41-51
2
1433_2
PS00797
14-3-3 proteins signature 2.
1433S_HUMAN
213-232
1
A:213-231
[
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Exons
(2, 2)
Info
All Exons
Exon 1.12d (P:385-391)
Exon 2.1 (A:1-231 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.11/1.12d
2: Boundary 1.12d/-
3: Boundary -/2.1
4: Boundary 2.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000269305
1a
ENSE00001146308
chr17:
7590856-7590695
162
P53_HUMAN
-
0
0
-
-
1.3a
ENST00000269305
3a
ENSE00002194362
chr17:
7579940-7579839
102
P53_HUMAN
1-25
25
0
-
-
1.3d
ENST00000269305
3d
ENSE00001710434
chr17:
7579721-7579700
22
P53_HUMAN
25-32
8
0
-
-
1.4b
ENST00000269305
4b
ENSE00001718735
chr17:
7579590-7579312
279
P53_HUMAN
33-125
93
0
-
-
1.5d
ENST00000269305
5d
ENSE00001255919
chr17:
7578554-7578371
184
P53_HUMAN
126-187
62
0
-
-
1.6a
ENST00000269305
6a
ENSE00001255912
chr17:
7578289-7578177
113
P53_HUMAN
187-224
38
0
-
-
1.7b
ENST00000269305
7b
ENSE00001665758
chr17:
7577608-7577499
110
P53_HUMAN
225-261
37
0
-
-
1.8
ENST00000269305
8
ENSE00001789298
chr17:
7577155-7577019
137
P53_HUMAN
261-307
47
0
-
-
1.9
ENST00000269305
9
ENSE00002149110
chr17:
7576926-7576853
74
P53_HUMAN
307-331
25
0
-
-
1.11
ENST00000269305
11
ENSE00001728015
chr17:
7574033-7573927
107
P53_HUMAN
332-367
36
0
-
-
1.12d
ENST00000269305
12d
ENSE00001757276
chr17:
7573008-7571720
1289
P53_HUMAN
367-393
27
1
P:385-391
7
2.1
ENST00000339276
1
ENSE00001406083
chr1:
27189653-27190947
1295
1433S_HUMAN
1-265
265
1
A:1-231 (gaps)
231
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3lw1a_ (A:)
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Classes
(
)
(
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Folds
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(
)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
14-3-3 protein
(60)
Family
:
14-3-3 protein
(60)
Protein domain
:
automated matches
(43)
Human (Homo sapiens) [TaxId: 9606]
(38)
1a
d3lw1a_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_14_3_3_3lw1A01 (A:3-231)
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Clans
(
)
(
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Families
(
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: 14-3-3]
(18)
Family
:
14-3-3
(18)
Homo sapiens (Human)
(10)
1a
14-3-3-3lw1A01
A:3-231
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