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3LVR
Asym. Unit
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Asym.Unit (152 KB)
Biol.Unit 1 (145 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF ASAP3 IN COMPLEX WITH ARF6 IN TRANSITION STATE SOAKED WITH CALCIUM
Authors
:
S. A. Ismail, I. R. Vetter, B. Sot, A. Wittinghofer
Date
:
22 Feb 10 (Deposition) - 09 Jun 10 (Release) - 16 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.38
Chains
:
Asym. Unit : E
Biol. Unit 1: E (1x)
Keywords
:
Arf6, Asap3, Uplc1, Gdp, Calcium, Arfgap, Arf, Linkers, Alternative Splicing, Ank Repeat, Coiled Coil, Cytoplasm, Metal-Binding, Phosphoprotein, Polymorphism, Zinc, Zinc-Finger, Cell Membrane, Endosome, Er-Golgi Transport, Golgi Apparatus, Gtp-Binding, Lipoprotein, Myristate, Nucleotide-Binding, Protein Transport, Transport
(Keyword Search:
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)
Reference
:
S. A. Ismail, I. R. Vetter, B. Sot, A. Wittinghofer
The Structure Of An Arf-Arfgap Complex Reveals A Ca2+ Regulatory Mechanism
Cell(Cambridge, Mass. ) V. 141 812 2010
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Hetero Components
(5, 5)
Info
All Hetero Components
1a: ALUMINUM FLUORIDE (AF3a)
2a: CALCIUM ION (CAa)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
4a: MAGNESIUM ION (MGa)
5a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AF3
1
Ligand/Ion
ALUMINUM FLUORIDE
2
CA
1
Ligand/Ion
CALCIUM ION
3
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
ZN
1
Ligand/Ion
ZINC ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS E:441 , CYS E:444 , CYS E:461 , CYS E:464 , ARG E:527
BINDING SITE FOR RESIDUE ZN E 735
2
AC2
SOFTWARE
LYS E:26 , THR E:27 , THR E:44 , ASP E:63 , HOH E:220 , GDP E:737 , AF3 E:738
BINDING SITE FOR RESIDUE MG E 736
3
AC3
SOFTWARE
ALA E:23 , ALA E:24 , GLY E:25 , LYS E:26 , THR E:27 , THR E:28 , THR E:41 , ASN E:122 , LYS E:123 , ASP E:125 , LEU E:126 , CYS E:155 , ALA E:156 , THR E:157 , HOH E:220 , GLY E:466 , ARG E:469 , GLU E:470 , MG E:736 , AF3 E:738
BINDING SITE FOR RESIDUE GDP E 737
4
AC4
SOFTWARE
ASP E:22 , ALA E:23 , LYS E:26 , THR E:27 , THR E:44 , GLY E:65 , GLY E:66 , GLN E:67 , HOH E:220 , HOH E:230 , ARG E:469 , MG E:736 , GDP E:737
BINDING SITE FOR RESIDUE AF3 E 738
5
AC5
SOFTWARE
ASP E:68 , GLU E:98 , HOH E:232 , GLN E:479
BINDING SITE FOR RESIDUE CA E 739
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_035612 (A617T, chain E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035612
A
617
T
ASAP3_HUMAN
Unclassified
---
E
A
617
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: ARF (E:11-173)
2: ARFGAP (E:426-551)
3: ANK_REP_REGION (E:590-674)
4: ANK_REPEAT (E:621-653)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARF
PS51417
small GTPase Arf family profile.
ARF6_HUMAN
7-173
1
E:11-173
2
ARFGAP
PS50115
ARF GTPase-activating proteins domain profile.
ASAP3_HUMAN
426-551
1
E:426-551
3
ANK_REP_REGION
PS50297
Ankyrin repeat region circular profile.
ASAP3_HUMAN
590-674
1
E:590-674
4
ANK_REPEAT
PS50088
Ankyrin repeat profile.
ASAP3_HUMAN
621-653
1
E:621-653
[
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]
Exons
(12, 12)
Info
All Exons
Exon 1.15 (E:423-448)
Exon 1.16c (E:448-492)
Exon 1.17b (E:493-524)
Exon 1.18a (E:524-583 (gaps))
Exon 1.19 (E:584-612)
Exon 1.20 (E:612-651 (gaps))
Exon 1.21 (E:651-673)
Exon 1.22a (E:674-14 (gaps))
Exon 1.23c (E:15-57 (gaps))
Exon 1.24b (E:57-123 (gaps))
Exon 1.25 (E:123-153)
Exon 1.26e (E:154-174)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.14/1.15
02: Boundary 1.15/1.16c
03: Boundary 1.16c/1.17b
04: Boundary 1.17b/1.18a
05: Boundary 1.18a/1.19
06: Boundary 1.19/1.20
07: Boundary 1.20/1.21
08: Boundary 1.21/1.22a
09: Boundary 1.22a/1.23c
10: Boundary 1.23c/1.24b
11: Boundary 1.24b/1.25
12: Boundary 1.25/1.26e
13: Boundary 1.26e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1e
ENST00000336689
1e
ENSE00001955692
chr1:
23810671-23810498
174
ASAP3_HUMAN
1-43
43
0
-
-
1.3
ENST00000336689
3
ENSE00001066312
chr1:
23782687-23782615
73
ASAP3_HUMAN
44-68
25
0
-
-
1.4b
ENST00000336689
4b
ENSE00001066316
chr1:
23782519-23782374
146
ASAP3_HUMAN
68-116
49
0
-
-
1.5
ENST00000336689
5
ENSE00001066314
chr1:
23779264-23779190
75
ASAP3_HUMAN
117-141
25
0
-
-
1.6
ENST00000336689
6
ENSE00001066309
chr1:
23778021-23777972
50
ASAP3_HUMAN
142-158
17
0
-
-
1.7c
ENST00000336689
7c
ENSE00001066307
chr1:
23769105-23768994
112
ASAP3_HUMAN
158-195
38
0
-
-
1.8
ENST00000336689
8
ENSE00001066306
chr1:
23768764-23768679
86
ASAP3_HUMAN
196-224
29
0
-
-
1.9a
ENST00000336689
9a
ENSE00001066311
chr1:
23768223-23768148
76
ASAP3_HUMAN
224-249
26
0
-
-
1.10a
ENST00000336689
10a
ENSE00001066308
chr1:
23767966-23767880
87
ASAP3_HUMAN
250-278
29
0
-
-
1.11
ENST00000336689
11
ENSE00001131313
chr1:
23767704-23767595
110
ASAP3_HUMAN
279-315
37
0
-
-
1.12a
ENST00000336689
12a
ENSE00001131309
chr1:
23765723-23765654
70
ASAP3_HUMAN
315-338
24
0
-
-
1.13b
ENST00000336689
13b
ENSE00001044551
chr1:
23765327-23765240
88
ASAP3_HUMAN
339-368
30
0
-
-
1.14
ENST00000336689
14
ENSE00001670618
chr1:
23763965-23763917
49
ASAP3_HUMAN
368-384
17
0
-
-
1.15
ENST00000336689
15
ENSE00001044572
chr1:
23763813-23763623
191
ASAP3_HUMAN
384-448
65
1
E:423-448
26
1.16c
ENST00000336689
16c
ENSE00000758697
chr1:
23763537-23763404
134
ASAP3_HUMAN
448-492
45
1
E:448-492
45
1.17b
ENST00000336689
17b
ENSE00000758695
chr1:
23763147-23763053
95
ASAP3_HUMAN
493-524
32
1
E:493-524
32
1.18a
ENST00000336689
18a
ENSE00001066303
chr1:
23762521-23762344
178
ASAP3_HUMAN
524-583
60
1
E:524-583 (gaps)
60
1.19
ENST00000336689
19
ENSE00000859742
chr1:
23761111-23761026
86
ASAP3_HUMAN
584-612
29
1
E:584-612
29
1.20
ENST00000336689
20
ENSE00001066304
chr1:
23760862-23760747
116
ASAP3_HUMAN
612-651
40
1
E:612-651 (gaps)
40
1.21
ENST00000336689
21
ENSE00001066305
chr1:
23760186-23760119
68
ASAP3_HUMAN
651-673
23
1
E:651-673
23
1.22a
ENST00000336689
22a
ENSE00000859737
chr1:
23760025-23759918
108
ASAP3_HUMAN
674-709
36
1
E:674-14 (gaps)
36
1.23c
ENST00000336689
23c
ENSE00000758666
chr1:
23759765-23759570
196
ASAP3_HUMAN
710-775
66
1
E:15-57 (gaps)
66
1.24b
ENST00000336689
24b
ENSE00000758656
chr1:
23758411-23758189
223
ASAP3_HUMAN
775-849
75
1
E:57-123 (gaps)
75
1.25
ENST00000336689
25
ENSE00000758631
chr1:
23757618-23757528
91
ASAP3_HUMAN
849-879
31
1
E:123-153
31
1.26e
ENST00000336689
26e
ENSE00001362141
chr1:
23756423-23755056
1368
ASAP3_HUMAN
880-903
24
1
E:154-174
21
[
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SCOP Domains
(0, 0)
Info
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View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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