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3LUE
Asym. Unit
Info
Asym.Unit (656 KB)
Biol.Unit 1 (651 KB)
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(1)
Title
:
MODEL OF ALPHA-ACTININ CH1 BOUND TO F-ACTIN
Authors
:
V. E. Galkin, A. Orlova, A. Salmazo, K. Djinovic-Carugo, E. H. Egelman
Date
:
17 Feb 10 (Deposition) - 28 Apr 10 (Release) - 19 May 10 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
15.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T (1x)
Keywords
:
Calponin Homology Domains, Acetylation, Atp-Binding, Cytoplasm, Cytoskeleton, Methylation, Nucleotide-Binding, Phosphoprotein, Actin-Binding, Calcium, Polymorphism, Structural Protein, Deafness, Disease Mutation, Dystonia
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. E. Galkin, A. Orlova, A. Salmazo, K. Djinovic-Carugo, E. H. Egelman
Opening Of Tandem Calponin Homology Domains Regulates Their Affinity For F-Actin.
Nat. Struct. Mol. Biol. V. 17 614 2010
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(6, 60)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_067810 (N12D, chain A/B/C/D/E/F/G/H/I/J, )
2: VAR_067811 (L65V, chain A/B/C/D/E/F/G/H/I/J, )
3: VAR_030026 (R183W, chain A/B/C/D/E/F/G/H/I/J, )
4: VAR_067812 (R196C, chain A/B/C/D/E/F/G/H/I/J, )
5: VAR_067813 (R196H, chain A/B/C/D/E/F/G/H/I/J, )
6: VAR_048185 (P243L, chain A/B/C/D/E/F/G/H/I/J, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_067810
N
12
D
ACTB_HUMAN
Disease (BRWS1)
281875331
A/B/C/D/E/F/G/H/I/J
N
12
D
2
UniProt
VAR_067811
L
65
V
ACTB_HUMAN
Disease (BRWS1)
281875332
A/B/C/D/E/F/G/H/I/J
L
65
V
3
UniProt
VAR_030026
R
183
W
ACTB_HUMAN
Disease (DYTJ)
---
A/B/C/D/E/F/G/H/I/J
R
183
W
4
UniProt
VAR_067812
R
196
C
ACTB_HUMAN
Disease (BRWS1)
281875333
A/B/C/D/E/F/G/H/I/J
R
196
C
5
UniProt
VAR_067813
R
196
H
ACTB_HUMAN
Disease (BRWS1)
281875334
A/B/C/D/E/F/G/H/I/J
R
196
H
6
UniProt
VAR_048185
P
243
L
ACTB_HUMAN
Polymorphism
11546899
A/B/C/D/E/F/G/H/I/J
P
243
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(6, 60)
Info
All PROSITE Patterns/Profiles
1: CH (K:45-149,L:45-149,M:45-149,N:45-14...)
2: ACTININ_1 (K:47-56,L:47-56,M:47-56,N:47-56,O:...)
3: ACTINS_1 (A:53-63,B:53-63,C:53-63,D:53-63,E:...)
4: ACTINS_ACT_LIKE (A:104-116,B:104-116,C:104-116,D:10...)
5: ACTININ_2 (K:121-145,L:121-145,M:121-145,N:12...)
6: ACTINS_2 (A:356-364,B:356-364,C:356-364,D:35...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CH
PS50021
Calponin homology domain profile.
ACTN3_HUMAN
45-149
158-261
10
K:45-149
L:45-149
M:45-149
N:45-149
O:45-149
P:45-149
Q:45-149
R:45-149
S:45-149
T:45-149
-
2
ACTININ_1
PS00019
Actinin-type actin-binding domain signature 1.
ACTN3_HUMAN
47-56
10
K:47-56
L:47-56
M:47-56
N:47-56
O:47-56
P:47-56
Q:47-56
R:47-56
S:47-56
T:47-56
3
ACTINS_1
PS00406
Actins signature 1.
ACTB_HUMAN
53-63
10
A:53-63
B:53-63
C:53-63
D:53-63
E:53-63
F:53-63
G:53-63
H:53-63
I:53-63
J:53-63
4
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTB_HUMAN
104-116
10
A:104-116
B:104-116
C:104-116
D:104-116
E:104-116
F:104-116
G:104-116
H:104-116
I:104-116
J:104-116
5
ACTININ_2
PS00020
Actinin-type actin-binding domain signature 2.
ACTN3_HUMAN
121-145
10
K:121-145
L:121-145
M:121-145
N:121-145
O:121-145
P:121-145
Q:121-145
R:121-145
S:121-145
T:121-145
6
ACTINS_2
PS00432
Actins signature 2.
ACTB_HUMAN
356-364
10
A:356-364
B:356-364
C:356-364
D:356-364
E:356-364
F:356-364
G:356-364
H:356-364
I:356-364
J:356-364
[
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]
Exons
(5, 50)
Info
All Exons
Exon 1.6b (A:2-41 | B:2-41 | C:2-41 | D:2-41 ...)
Exon 1.6h (A:42-121 | B:42-121 | C:42-121 | D...)
Exon 1.6n (A:122-268 | B:122-268 | C:122-268 ...)
Exon 1.6s (A:268-328 | B:268-328 | C:268-328 ...)
Exon 1.7d (A:329-375 | B:329-375 | C:329-375 ...)
View:
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All Exon Boundaries
1: Boundary 1.4a/1.6b
2: Boundary 1.6b/1.6h
3: Boundary 1.6h/1.6n
4: Boundary 1.6n/1.6s
5: Boundary 1.6s/1.7d
6: Boundary 1.7d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000331789
4a
ENSE00001821990
chr7:
5570340-5570155
186
ACTB_HUMAN
-
0
0
-
-
1.6b
ENST00000331789
6b
ENSE00002191851
chr7:
5569294-5569166
129
ACTB_HUMAN
1-41
41
10
A:2-41
B:2-41
C:2-41
D:2-41
E:2-41
F:2-41
G:2-41
H:2-41
I:2-41
J:2-41
40
40
40
40
40
40
40
40
40
40
1.6h
ENST00000331789
6h
ENSE00001793275
chr7:
5569031-5568792
240
ACTB_HUMAN
42-121
80
10
A:42-121
B:42-121
C:42-121
D:42-121
E:42-121
F:42-121
G:42-121
H:42-121
I:42-121
J:42-121
80
80
80
80
80
80
80
80
80
80
1.6n
ENST00000331789
6n
ENSE00001597418
chr7:
5568350-5567912
439
ACTB_HUMAN
122-268
147
10
A:122-268
B:122-268
C:122-268
D:122-268
E:122-268
F:122-268
G:122-268
H:122-268
I:122-268
J:122-268
147
147
147
147
147
147
147
147
147
147
1.6s
ENST00000331789
6s
ENSE00001799439
chr7:
5567816-5567635
182
ACTB_HUMAN
268-328
61
10
A:268-328
B:268-328
C:268-328
D:268-328
E:268-328
F:268-328
G:268-328
H:268-328
I:268-328
J:268-328
61
61
61
61
61
61
61
61
61
61
1.7d
ENST00000331789
7d
ENSE00001902654
chr7:
5567522-5566782
741
ACTB_HUMAN
329-375
47
10
A:329-375
B:329-375
C:329-375
D:329-375
E:329-375
F:329-375
G:329-375
H:329-375
I:329-375
J:329-375
47
47
47
47
47
47
47
47
47
47
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 20)
Info
all PFAM domains
1a: PFAM_Actin_3lueJ01 (J:2-375)
1b: PFAM_Actin_3lueJ02 (J:2-375)
1c: PFAM_Actin_3lueJ03 (J:2-375)
1d: PFAM_Actin_3lueJ04 (J:2-375)
1e: PFAM_Actin_3lueJ05 (J:2-375)
1f: PFAM_Actin_3lueJ06 (J:2-375)
1g: PFAM_Actin_3lueJ07 (J:2-375)
1h: PFAM_Actin_3lueJ08 (J:2-375)
1i: PFAM_Actin_3lueJ09 (J:2-375)
1j: PFAM_Actin_3lueJ10 (J:2-375)
2a: PFAM_CH_3lueT01 (T:48-149)
2b: PFAM_CH_3lueT02 (T:48-149)
2c: PFAM_CH_3lueT03 (T:48-149)
2d: PFAM_CH_3lueT04 (T:48-149)
2e: PFAM_CH_3lueT05 (T:48-149)
2f: PFAM_CH_3lueT06 (T:48-149)
2g: PFAM_CH_3lueT07 (T:48-149)
2h: PFAM_CH_3lueT08 (T:48-149)
2i: PFAM_CH_3lueT09 (T:48-149)
2j: PFAM_CH_3lueT10 (T:48-149)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Actin_ATPase
(173)
Family
:
Actin
(70)
Homo sapiens (Human)
(1)
1a
Actin-3lueJ01
J:2-375
1b
Actin-3lueJ02
J:2-375
1c
Actin-3lueJ03
J:2-375
1d
Actin-3lueJ04
J:2-375
1e
Actin-3lueJ05
J:2-375
1f
Actin-3lueJ06
J:2-375
1g
Actin-3lueJ07
J:2-375
1h
Actin-3lueJ08
J:2-375
1i
Actin-3lueJ09
J:2-375
1j
Actin-3lueJ10
J:2-375
Clan
:
CH
(43)
Family
:
CH
(43)
Homo sapiens (Human)
(31)
2a
CH-3lueT01
T:48-149
2b
CH-3lueT02
T:48-149
2c
CH-3lueT03
T:48-149
2d
CH-3lueT04
T:48-149
2e
CH-3lueT05
T:48-149
2f
CH-3lueT06
T:48-149
2g
CH-3lueT07
T:48-149
2h
CH-3lueT08
T:48-149
2i
CH-3lueT09
T:48-149
2j
CH-3lueT10
T:48-149
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Asym.Unit (656 KB)
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