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3LUB
Biol. Unit 2
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Asym.Unit (543 KB)
Biol.Unit 1 (268 KB)
Biol.Unit 2 (267 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE CREATININE AMIDOHYDROLASE (YP_211512.1) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 2.11 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
17 Feb 10 (Deposition) - 09 Mar 10 (Release) - 09 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.11
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Putative Creatinine Amidohydrolase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Creatinine Amidohydrolase (Yp_211512. 1) From Bacteroides Fragilis Nctc 9343 At 2. 11 A Resolution
To Be Published
[
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Hetero Components
(2, 47)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
2m: CHLORIDE ION (CLm)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
4a: SELENOMETHIONINE (MSEa)
4aa: SELENOMETHIONINE (MSEaa)
4ab: SELENOMETHIONINE (MSEab)
4ac: SELENOMETHIONINE (MSEac)
4ad: SELENOMETHIONINE (MSEad)
4ae: SELENOMETHIONINE (MSEae)
4af: SELENOMETHIONINE (MSEaf)
4ag: SELENOMETHIONINE (MSEag)
4ah: SELENOMETHIONINE (MSEah)
4ai: SELENOMETHIONINE (MSEai)
4aj: SELENOMETHIONINE (MSEaj)
4ak: SELENOMETHIONINE (MSEak)
4al: SELENOMETHIONINE (MSEal)
4am: SELENOMETHIONINE (MSEam)
4an: SELENOMETHIONINE (MSEan)
4ao: SELENOMETHIONINE (MSEao)
4ap: SELENOMETHIONINE (MSEap)
4aq: SELENOMETHIONINE (MSEaq)
4ar: SELENOMETHIONINE (MSEar)
4as: SELENOMETHIONINE (MSEas)
4at: SELENOMETHIONINE (MSEat)
4au: SELENOMETHIONINE (MSEau)
4av: SELENOMETHIONINE (MSEav)
4aw: SELENOMETHIONINE (MSEaw)
4ax: SELENOMETHIONINE (MSEax)
4ay: SELENOMETHIONINE (MSEay)
4az: SELENOMETHIONINE (MSEaz)
4b: SELENOMETHIONINE (MSEb)
4ba: SELENOMETHIONINE (MSEba)
4bb: SELENOMETHIONINE (MSEbb)
4bc: SELENOMETHIONINE (MSEbc)
4bd: SELENOMETHIONINE (MSEbd)
4be: SELENOMETHIONINE (MSEbe)
4bf: SELENOMETHIONINE (MSEbf)
4bg: SELENOMETHIONINE (MSEbg)
4bh: SELENOMETHIONINE (MSEbh)
4bi: SELENOMETHIONINE (MSEbi)
4bj: SELENOMETHIONINE (MSEbj)
4bk: SELENOMETHIONINE (MSEbk)
4bl: SELENOMETHIONINE (MSEbl)
4bm: SELENOMETHIONINE (MSEbm)
4bn: SELENOMETHIONINE (MSEbn)
4bo: SELENOMETHIONINE (MSEbo)
4bp: SELENOMETHIONINE (MSEbp)
4bq: SELENOMETHIONINE (MSEbq)
4br: SELENOMETHIONINE (MSEbr)
4bs: SELENOMETHIONINE (MSEbs)
4bt: SELENOMETHIONINE (MSEbt)
4bu: SELENOMETHIONINE (MSEbu)
4bv: SELENOMETHIONINE (MSEbv)
4bw: SELENOMETHIONINE (MSEbw)
4bx: SELENOMETHIONINE (MSEbx)
4by: SELENOMETHIONINE (MSEby)
4bz: SELENOMETHIONINE (MSEbz)
4c: SELENOMETHIONINE (MSEc)
4ca: SELENOMETHIONINE (MSEca)
4cb: SELENOMETHIONINE (MSEcb)
4cc: SELENOMETHIONINE (MSEcc)
4cd: SELENOMETHIONINE (MSEcd)
4ce: SELENOMETHIONINE (MSEce)
4cf: SELENOMETHIONINE (MSEcf)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
4u: SELENOMETHIONINE (MSEu)
4v: SELENOMETHIONINE (MSEv)
4w: SELENOMETHIONINE (MSEw)
4x: SELENOMETHIONINE (MSEx)
4y: SELENOMETHIONINE (MSEy)
4z: SELENOMETHIONINE (MSEz)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
5m: ZINC ION (ZNm)
5n: ZINC ION (ZNn)
5o: ZINC ION (ZNo)
5p: ZINC ION (ZNp)
5q: ZINC ION (ZNq)
5r: ZINC ION (ZNr)
5s: ZINC ION (ZNs)
5t: ZINC ION (ZNt)
5u: ZINC ION (ZNu)
5v: ZINC ION (ZNv)
5w: ZINC ION (ZNw)
5x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
4
MSE
42
Mod. Amino Acid
SELENOMETHIONINE
5
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: DC6 (SOFTWARE)
02: DC7 (SOFTWARE)
03: DC8 (SOFTWARE)
04: DC9 (SOFTWARE)
05: EC1 (SOFTWARE)
06: EC2 (SOFTWARE)
07: EC3 (SOFTWARE)
08: EC4 (SOFTWARE)
09: EC5 (SOFTWARE)
10: EC6 (SOFTWARE)
11: EC7 (SOFTWARE)
12: EC8 (SOFTWARE)
13: EC9 (SOFTWARE)
14: FC1 (SOFTWARE)
15: FC2 (SOFTWARE)
16: FC3 (SOFTWARE)
17: FC4 (SOFTWARE)
18: FC5 (SOFTWARE)
19: FC6 (SOFTWARE)
20: FC7 (SOFTWARE)
21: FC8 (SOFTWARE)
22: FC9 (SOFTWARE)
23: GC1 (SOFTWARE)
24: GC2 (SOFTWARE)
25: GC3 (SOFTWARE)
26: GC4 (SOFTWARE)
27: GC5 (SOFTWARE)
28: GC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
DC6
SOFTWARE
GLU G:31 , ASP G:42 , HIS G:119 , ZN G:302 , HOH G:380 , HOH G:613 , HOH G:754
BINDING SITE FOR RESIDUE ZN G 301
02
DC7
SOFTWARE
HIS G:33 , ASP G:42 , GLU G:167 , ZN G:301 , HOH G:380
BINDING SITE FOR RESIDUE ZN G 302
03
DC8
SOFTWARE
HOH G:1037 , HOH G:1326 , HOH G:2063 , HOH G:2098 , HOH L:377 , HOH L:1567 , HOH L:1822
BINDING SITE FOR RESIDUE CA G 254
04
DC9
SOFTWARE
LEU G:25 , MSE G:68 , PRO G:69 , THR H:30 , PRO H:72 , PHE H:73
BINDING SITE FOR RESIDUE EDO G 255
05
EC1
SOFTWARE
ASN G:77 , ARG G:206
BINDING SITE FOR RESIDUE CL G 256
06
EC2
SOFTWARE
GLU H:31 , ASP H:42 , HIS H:119 , HOH H:268 , ZN H:302 , HOH H:486 , HOH H:1257
BINDING SITE FOR RESIDUE ZN H 301
07
EC3
SOFTWARE
HIS H:33 , ASP H:42 , GLU H:167 , HOH H:268 , ZN H:301
BINDING SITE FOR RESIDUE ZN H 302
08
EC4
SOFTWARE
ASN H:77 , ARG H:206
BINDING SITE FOR RESIDUE CL H 254
09
EC5
SOFTWARE
GLU I:31 , ASP I:42 , HIS I:119 , ZN I:302 , HOH I:462 , HOH I:508
BINDING SITE FOR RESIDUE ZN I 301
10
EC6
SOFTWARE
HIS I:33 , ASP I:42 , GLU I:167 , ZN I:301 , HOH I:462
BINDING SITE FOR RESIDUE ZN I 302
11
EC7
SOFTWARE
ASP I:209 , HOH I:477 , HOH I:506 , HOH I:698 , HOH I:1055 , HOH I:1420 , HOH I:1560
BINDING SITE FOR RESIDUE CA I 254
12
EC8
SOFTWARE
HOH I:260 , HOH I:1208 , HOH I:1476 , HOH I:1981 , HOH I:2104
BINDING SITE FOR RESIDUE CA I 255
13
EC9
SOFTWARE
ASN I:77 , ARG I:206
BINDING SITE FOR RESIDUE CL I 256
14
FC1
SOFTWARE
GLU J:31 , ASP J:42 , HIS J:119 , HOH J:270 , ZN J:302 , HOH J:1099
BINDING SITE FOR RESIDUE ZN J 301
15
FC2
SOFTWARE
HIS J:33 , ASP J:42 , GLU J:167 , HOH J:270 , ZN J:301
BINDING SITE FOR RESIDUE ZN J 302
16
FC3
SOFTWARE
HOH J:291 , HOH J:605 , HOH J:1568 , HOH J:1667 , HOH J:1881 , HOH J:1938
BINDING SITE FOR RESIDUE CA J 254
17
FC4
SOFTWARE
THR I:30 , PHE I:73 , LEU J:25 , PRO J:69 , ILE J:101
BINDING SITE FOR RESIDUE EDO J 255
18
FC5
SOFTWARE
ASN J:77 , ARG J:206
BINDING SITE FOR RESIDUE CL J 256
19
FC6
SOFTWARE
GLU K:31 , ASP K:42 , HIS K:119 , ZN K:302 , HOH K:524 , HOH K:549
BINDING SITE FOR RESIDUE ZN K 301
20
FC7
SOFTWARE
HIS K:33 , ASP K:42 , GLU K:167 , ZN K:301 , HOH K:549
BINDING SITE FOR RESIDUE ZN K 302
21
FC8
SOFTWARE
LEU K:25 , MSE K:68 , PRO K:69 , THR L:30 , PRO L:72 , PHE L:73
BINDING SITE FOR RESIDUE EDO K 254
22
FC9
SOFTWARE
GLY K:79 , ARG K:81 , GLU K:82
BINDING SITE FOR RESIDUE EDO K 255
23
GC1
SOFTWARE
ASN K:77 , ARG K:206
BINDING SITE FOR RESIDUE CL K 256
24
GC2
SOFTWARE
GLU L:31 , ASP L:42 , HIS L:119 , ZN L:302 , HOH L:453 , HOH L:1225
BINDING SITE FOR RESIDUE ZN L 301
25
GC3
SOFTWARE
HIS L:33 , ASP L:42 , GLU L:167 , ZN L:301 , HOH L:453
BINDING SITE FOR RESIDUE ZN L 302
26
GC4
SOFTWARE
HOH L:321 , HOH L:1472 , HOH L:1622
BINDING SITE FOR RESIDUE CA L 254
27
GC5
SOFTWARE
THR K:30 , PHE K:73 , LEU L:25 , MSE L:68 , PRO L:69
BINDING SITE FOR RESIDUE EDO L 255
28
GC6
SOFTWARE
ASN L:77 , ARG L:206
BINDING SITE FOR RESIDUE CL L 256
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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All SCOP Domains
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Creatininase_3lubL01 (L:10-244)
1b: PFAM_Creatininase_3lubL02 (L:10-244)
1c: PFAM_Creatininase_3lubL03 (L:10-244)
1d: PFAM_Creatininase_3lubL04 (L:10-244)
1e: PFAM_Creatininase_3lubL05 (L:10-244)
1f: PFAM_Creatininase_3lubL06 (L:10-244)
1g: PFAM_Creatininase_3lubL07 (L:10-244)
1h: PFAM_Creatininase_3lubL08 (L:10-244)
1i: PFAM_Creatininase_3lubL09 (L:10-244)
1j: PFAM_Creatininase_3lubL10 (L:10-244)
1k: PFAM_Creatininase_3lubL11 (L:10-244)
1l: PFAM_Creatininase_3lubL12 (L:10-244)
View:
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Clans
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(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Creatininase]
(2)
Family
:
Creatininase
(2)
Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
(1)
1a
Creatininase-3lubL01
L:10-244
1b
Creatininase-3lubL02
L:10-244
1c
Creatininase-3lubL03
L:10-244
1d
Creatininase-3lubL04
L:10-244
1e
Creatininase-3lubL05
L:10-244
1f
Creatininase-3lubL06
L:10-244
1g
Creatininase-3lubL07
L:10-244
1h
Creatininase-3lubL08
L:10-244
1i
Creatininase-3lubL09
L:10-244
1j
Creatininase-3lubL10
L:10-244
1k
Creatininase-3lubL11
L:10-244
1l
Creatininase-3lubL12
L:10-244
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