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3LU0
Asym. Unit
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Asym.Unit (446 KB)
Biol.Unit 1 (440 KB)
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(1)
Title
:
MOLECULAR MODEL OF ESCHERICHIA COLI CORE RNA POLYMERASE
Authors
:
S. A. Darst
Date
:
16 Feb 10 (Deposition) - 29 Sep 10 (Release) - 22 Feb 12 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
11.20
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
E. Coli Rna Polymerase, Dna-Directed Rna Polymerase, Nucleotidyltransferase, Transcription, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Opalka, J. Brown, W. J. Lane, K. A. Twist, R. Landick, F. J. Asturias, S. A. Darst
Complete Structural Model Of Escherichia Coli Rna Polymeras From A Hybrid Approach.
Plos Biol. V. 8 00483 2010
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
1
Ligand/Ion
MAGNESIUM ION
2
ZN
2
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP D:460 , ASP D:462 , ASP D:464
BINDING SITE FOR RESIDUE MG D 1408
2
AC2
SOFTWARE
CYS D:70 , CYS D:72 , CYS D:88
BINDING SITE FOR RESIDUE ZN D 1409
3
AC3
SOFTWARE
ARG D:883 , CYS D:888 , CYS D:895 , CYS D:898
BINDING SITE FOR RESIDUE ZN D 1410
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RNA_POL_BETA (C:1063-1075)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNA_POL_BETA
PS01166
RNA polymerases beta chain signature.
RPOB_ECOLI
1063-1075
1
C:1063-1075
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(14, 17)
Info
all PFAM domains
01a: PFAM_RNA_pol_Rpb2_6_3lu0C01 (C:715-1264)
02a: PFAM_RNA_pol_L_3lu0B01 (B:28-229)
02b: PFAM_RNA_pol_L_3lu0B02 (B:28-229)
03a: PFAM_RNA_pol_A_bac_3lu0B03 (B:58-178)
03b: PFAM_RNA_pol_A_bac_3lu0B04 (B:58-178)
04a: PFAM_RNA_pol_Rpb1_1_3lu0D01 (D:14-342)
05a: PFAM_RNA_pol_Rpb1_2_3lu0D02 (D:344-486)
06a: PFAM_RNA_pol_Rpb1_3_3lu0D03 (D:489-644)
07a: PFAM_RNA_pol_Rpb1_4_3lu0D04 (D:673-764)
08a: PFAM_RNA_pol_Rpb1_5_3lu0D05 (D:766-1322)
09a: PFAM_RNA_pol_Rpb2_1_3lu0C02 (C:26-509)
10a: PFAM_RNA_pol_Rpb2_2_3lu0C03 (C:329-454)
10b: PFAM_RNA_pol_Rpb2_2_3lu0C04 (C:329-454)
11a: PFAM_RNA_pol_Rpb2_3_3lu0C05 (C:513-582)
12a: PFAM_RNA_pol_Rpb2_45_3lu0C06 (C:591-656)
13a: PFAM_RNA_pol_Rpb2_7_3lu0C07 (C:1266-1342)
14a: PFAM_RNA_pol_Rpb6_3lu0E01 (E:7-63)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
LEF-8-like
(36)
Family
:
RNA_pol_Rpb2_6
(36)
Escherichia coli (strain K12)
(1)
01a
RNA_pol_Rpb2_6-3lu0C01
C:715-1264
Clan
:
RBP11-like
(36)
Family
:
RNA_pol_L
(36)
Escherichia coli (strain K12)
(1)
02a
RNA_pol_L-3lu0B01
B:28-229
02b
RNA_pol_L-3lu0B02
B:28-229
Clan
:
no clan defined [family: RNA_pol_A_bac]
(36)
Family
:
RNA_pol_A_bac
(36)
Escherichia coli (strain K12)
(1)
03a
RNA_pol_A_bac-3lu0B03
B:58-178
03b
RNA_pol_A_bac-3lu0B04
B:58-178
Clan
:
no clan defined [family: RNA_pol_Rpb1_1]
(37)
Family
:
RNA_pol_Rpb1_1
(37)
Escherichia coli (strain K12)
(1)
04a
RNA_pol_Rpb1_1-3lu0D01
D:14-342
Clan
:
no clan defined [family: RNA_pol_Rpb1_2]
(36)
Family
:
RNA_pol_Rpb1_2
(36)
Escherichia coli (strain K12)
(1)
05a
RNA_pol_Rpb1_2-3lu0D02
D:344-486
Clan
:
no clan defined [family: RNA_pol_Rpb1_3]
(36)
Family
:
RNA_pol_Rpb1_3
(36)
Escherichia coli (strain K12)
(1)
06a
RNA_pol_Rpb1_3-3lu0D03
D:489-644
Clan
:
no clan defined [family: RNA_pol_Rpb1_4]
(36)
Family
:
RNA_pol_Rpb1_4
(36)
Escherichia coli (strain K12)
(1)
07a
RNA_pol_Rpb1_4-3lu0D04
D:673-764
Clan
:
no clan defined [family: RNA_pol_Rpb1_5]
(36)
Family
:
RNA_pol_Rpb1_5
(36)
Escherichia coli (strain K12)
(1)
08a
RNA_pol_Rpb1_5-3lu0D05
D:766-1322
Clan
:
no clan defined [family: RNA_pol_Rpb2_1]
(37)
Family
:
RNA_pol_Rpb2_1
(37)
Escherichia coli (strain K12)
(2)
09a
RNA_pol_Rpb2_1-3lu0C02
C:26-509
Clan
:
no clan defined [family: RNA_pol_Rpb2_2]
(36)
Family
:
RNA_pol_Rpb2_2
(36)
Escherichia coli (strain K12)
(2)
10a
RNA_pol_Rpb2_2-3lu0C03
C:329-454
10b
RNA_pol_Rpb2_2-3lu0C04
C:329-454
Clan
:
no clan defined [family: RNA_pol_Rpb2_3]
(35)
Family
:
RNA_pol_Rpb2_3
(35)
Escherichia coli (strain K12)
(1)
11a
RNA_pol_Rpb2_3-3lu0C05
C:513-582
Clan
:
no clan defined [family: RNA_pol_Rpb2_45]
(8)
Family
:
RNA_pol_Rpb2_45
(8)
Escherichia coli (strain K12)
(1)
12a
RNA_pol_Rpb2_45-3lu0C06
C:591-656
Clan
:
no clan defined [family: RNA_pol_Rpb2_7]
(36)
Family
:
RNA_pol_Rpb2_7
(36)
Escherichia coli (strain K12)
(1)
13a
RNA_pol_Rpb2_7-3lu0C07
C:1266-1342
Clan
:
no clan defined [family: RNA_pol_Rpb6]
(37)
Family
:
RNA_pol_Rpb6
(37)
Escherichia coli (strain K12)
(1)
14a
RNA_pol_Rpb6-3lu0E01
E:7-63
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