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3LS7
Asym. Unit
Info
Asym.Unit (62 KB)
Biol.Unit 1 (57 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THERMOLYSIN IN COMPLEX WITH XENON
Authors
:
J. Behnen, G. Klebe, A. Heine, B. Brumshtein
Date
:
12 Feb 10 (Deposition) - 23 Feb 11 (Release) - 23 Feb 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein-Xe Complex, Protease, Hydrolase, Metalloprotease, Metal- Binding, Secreted, Zymogen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Behnen, H. Krueger, L. Toker, B. Brumshtein, I. Silman, J. L. Sussman, G. Klebe, A. Heine
Old Acquantance Rediscovered, Use Of Xenon/Protein Complexe As A Generic Tool For Sad Phasing Of In House Data
To Be Published
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Hetero Components
(7, 15)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: DIMETHYL SULFOXIDE (DMSa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
4a: LYSINE (LYSa)
5a: VALINE (VALa)
6a: XENON (XEa)
7a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
3
GOL
6
Ligand/Ion
GLYCEROL
4
LYS
1
Mod. Amino Acid
LYSINE
5
VAL
1
Mod. Amino Acid
VALINE
6
XE
1
Ligand/Ion
XENON
7
ZN
1
Ligand/Ion
ZINC ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:57 , ASP A:59 , GLN A:61 , HOH A:1001 , HOH A:1020 , HOH A:1081
BINDING SITE FOR RESIDUE CA A 601
02
AC2
SOFTWARE
TYR A:193 , THR A:194 , ILE A:197 , ASP A:200 , HOH A:1002 , HOH A:1016
BINDING SITE FOR RESIDUE CA A 602
03
AC3
SOFTWARE
GLU A:177 , ASN A:183 , ASP A:185 , GLU A:190 , HOH A:1003 , HOH A:1191
BINDING SITE FOR RESIDUE CA A 603
04
AC4
SOFTWARE
ASP A:138 , GLU A:177 , ASP A:185 , GLU A:187 , GLU A:190 , HOH A:1032
BINDING SITE FOR RESIDUE CA A 604
05
AC5
SOFTWARE
HIS A:142 , HIS A:146 , GLU A:166 , HOH A:1194
BINDING SITE FOR RESIDUE ZN A 701
06
AC6
SOFTWARE
ASN A:112 , ALA A:113 , GLU A:143 , LEU A:202 , ARG A:203 , HIS A:231 , LYS A:802 , HOH A:1194
BINDING SITE FOR RESIDUE VAL A 801
07
AC7
SOFTWARE
ASN A:111 , ASN A:112 , PHE A:130 , HIS A:231 , VAL A:801
BINDING SITE FOR RESIDUE LYS A 802
08
AC8
SOFTWARE
TRP A:115 , HIS A:146 , ASP A:150 , ASN A:165 , GOL A:904 , HOH A:1153 , HOH A:1213
BINDING SITE FOR RESIDUE GOL A 901
09
AC9
SOFTWARE
GLY A:109 , TYR A:110 , ASN A:111 , ASN A:112 , GLN A:158 , ASN A:227
BINDING SITE FOR RESIDUE GOL A 902
10
BC1
SOFTWARE
GLY A:248 , SER A:254 , VAL A:255 , GLN A:273 , LEU A:275 , HOH A:1036 , HOH A:1131 , HOH A:1161 , HOH A:1187
BINDING SITE FOR RESIDUE GOL A 903
11
BC2
SOFTWARE
TYR A:110 , TYR A:157 , GOL A:901 , HOH A:1047 , HOH A:1074
BINDING SITE FOR RESIDUE GOL A 904
12
BC3
SOFTWARE
ASN A:37 , ASN A:96 , ASN A:97 , GLY A:199
BINDING SITE FOR RESIDUE GOL A 905
13
BC4
SOFTWARE
PRO A:51 , GLN A:119
BINDING SITE FOR RESIDUE GOL A 906
14
BC5
SOFTWARE
TYR A:66 , SER A:218 , TYR A:251
BINDING SITE FOR RESIDUE DMS A 911
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:139-148)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
THER_BACTH
371-380
1
A:139-148
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3ls7a_ (A:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Thermolysin-like
(130)
Protein domain
:
Thermolysin
(121)
Bacillus thermoproteolyticus [TaxId: 1427]
(121)
1a
d3ls7a_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_M4_3ls7A01 (A:4-151)
2a: PFAM_Peptidase_M4_C_3ls7A02 (A:153-315)
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Clans
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M4
(54)
Bacillus thermoproteolyticus
(49)
1a
Peptidase_M4-3ls7A01
A:4-151
Family
:
Peptidase_M4_C
(54)
Bacillus thermoproteolyticus
(49)
2a
Peptidase_M4_C-3ls7A02
A:153-315
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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Asym.Unit (62 KB)
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