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3LS6
Biol. Unit 1
Info
Asym.Unit (77 KB)
Biol.Unit 1 (71 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE IN COMPLEX WITH SULFATE AND ZINC
Authors
:
P. Kumar, S. Karthikeyan
Date
:
12 Feb 10 (Deposition) - 15 Sep 10 (Release) - 05 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Dhbps, Dimetal Center, Drug Target, Antibacterial, Lyase, Magnesium, Metal-Binding, Riboflavin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Kumar, M. Singh, R. Gautam, S. Karthikeyan
Potential Anti-Bacterial Drug Target: Structural Characterization Of 3, 4-Dihydroxy-2-Butanone-4-Phosphate Synthase From Salmonella Typhimurium Lt2.
Proteins V. 78 3292 2010
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: MAGNESIUM ION (MGa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
4k: ZINC ION (ZNk)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
SO4
3
Ligand/Ion
SULFATE ION
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:37 , GLU A:38 , ARG A:150 , GLY A:152 , HIS A:153 , THR A:154 , ZN A:303 , HOH A:402 , HOH A:612
BINDING SITE FOR RESIDUE SO4 A 300
02
AC2
SOFTWARE
GLU A:38 , HIS A:153 , SO4 A:300 , HOH A:400 , HOH A:402
BINDING SITE FOR RESIDUE ZN A 303
03
AC3
SOFTWARE
HIS A:136 , HOH A:617 , GLU B:174 , HOH B:614 , HOH B:616 , HOH B:671 , HOH B:782
BINDING SITE FOR RESIDUE ZN A 308
04
AC4
SOFTWARE
HIS A:61 , HIS A:195 , HOH A:621 , HOH A:622 , HOH A:623 , HOH A:624
BINDING SITE FOR RESIDUE ZN A 309
05
AC5
SOFTWARE
ASP A:130 , HOH A:567 , HOH A:568 , HOH A:569 , HOH A:570
BINDING SITE FOR RESIDUE ZN A 311
06
AC6
SOFTWARE
GLU A:38 , HOH A:610 , HOH A:612 , ZN B:310 , HOH B:611 , HOH B:618
BINDING SITE FOR RESIDUE MG A 312
07
AC7
SOFTWARE
ARG A:60 , HIS A:61 , LEU A:175 , THR A:176 , ASN A:177 , ASP A:178
BINDING SITE FOR RESIDUE GOL A 800
08
AC8
SOFTWARE
ARG B:37 , GLU B:38 , THR B:93 , ARG B:150 , GLY B:152 , HIS B:153 , THR B:154 , ZN B:304 , HOH B:403
BINDING SITE FOR RESIDUE SO4 B 301
09
AC9
SOFTWARE
THR B:71 , GLU B:72 , ASP B:73 , LYS B:76 , ALA B:144 , ZN B:305 , HOH B:423 , HOH B:483 , HOH B:584
BINDING SITE FOR RESIDUE SO4 B 302
10
BC1
SOFTWARE
GLU B:38 , HIS B:153 , SO4 B:301 , HOH B:403 , HOH B:783
BINDING SITE FOR RESIDUE ZN B 304
11
BC2
SOFTWARE
ASP B:73 , SO4 B:302
BINDING SITE FOR RESIDUE ZN B 305
12
BC3
SOFTWARE
HIS B:195 , HOH B:595 , HOH B:596
BINDING SITE FOR RESIDUE ZN B 306
13
BC4
SOFTWARE
GLU A:14 , HIS B:61 , ZN B:313 , HOH B:613 , HOH B:772
BINDING SITE FOR RESIDUE ZN B 307
14
BC5
SOFTWARE
GLU A:174 , MG A:312 , HOH A:610 , HOH A:620 , HIS B:136 , HOH B:618
BINDING SITE FOR RESIDUE ZN B 310
15
BC6
SOFTWARE
GLU A:14 , LEU B:57 , HIS B:61 , HIS B:195 , ZN B:307 , HOH B:772
BINDING SITE FOR RESIDUE ZN B 313
16
BC7
SOFTWARE
HIS B:212 , HOH B:598
BINDING SITE FOR RESIDUE ZN B 314
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ls6a_ (A:)
1b: SCOP_d3ls6b_ (B:)
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Classes
(
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)
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)
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
YrdC/RibB
(27)
Superfamily
:
YrdC/RibB
(27)
Family
:
3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
(19)
Protein domain
:
automated matches
(6)
Salmonella typhimurium [TaxId: 90371]
(3)
1a
d3ls6a_
A:
1b
d3ls6b_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_DHBP_synthase_3ls6B01 (B:16-209)
1b: PFAM_DHBP_synthase_3ls6B02 (B:16-209)
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(
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)
(
)
Clan
:
no clan defined [family: DHBP_synthase]
(17)
Family
:
DHBP_synthase
(17)
Salmonella typhimurium
(3)
1a
DHBP_synthase-3ls6B01
B:16-209
1b
DHBP_synthase-3ls6B02
B:16-209
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Asymmetric Unit 1
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