PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3LPW
Asym. Unit
Info
Asym.Unit (147 KB)
Biol.Unit 1 (73 KB)
Biol.Unit 2 (72 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE FNIII-TANDEM A77-A78 FROM THE A-BAND OF TITIN
Authors
:
R. M. Bucher, O. Mayans
Date
:
06 Feb 10 (Deposition) - 08 Sep 10 (Release) - 08 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Intracellular Fniii-Tandem, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. M. Bucher, D. I. Svergun, C. Muhle-Goll, O. Mayans
The Structure Of The Fniii Tandem A77-A78 Points To A Periodically Conserved Architecture In The Myosin-Binding Region Of Titin
J. Mol. Biol. V. 401 843 2010
[
close entry info
]
Hetero Components
(2, 3)
Info
All Hetero Components
1a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
1b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
2
MRD
1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
[
close Hetero Component info
]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:92 , THR A:93 , ALA A:94 , HOH A:321 , HOH A:487 , ARG B:45 , LYS B:50
BINDING SITE FOR RESIDUE MPD A 394
2
AC2
SOFTWARE
ILE A:37 , LYS A:38 , TYR A:40 , HIS A:60 , GLY A:145 , HOH A:428 , HOH A:495 , HOH A:552
BINDING SITE FOR RESIDUE MRD A 395
3
AC3
SOFTWARE
ILE B:37 , LYS B:38 , TYR B:40 , HIS B:60 , THR B:62 , LYS B:144 , GLY B:145
BINDING SITE FOR RESIDUE MPD B 393
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_040239 (E95Q, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_040239
E
22968
Q
TITIN_HUMAN
Polymorphism
---
A/B
E
95
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: FN3 (-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
TITIN_HUMAN
14019-14114
14120-14215
14221-14316
14417-14513
14517-14614
14713-14806
14812-14907
14913-15007
15010-15107
15113-15207
15214-15310
15409-15503
15509-15604
15731-15826
15929-16025
15832-15926
16126-16218
16224-16318
16427-16522
16528-16628
16634-16734
16841-16934
16941-17041
17147-17240
17246-17345
17348-17445
17545-17640
17646-17741
17842-17935
17941-18036
18042-18139
18239-18333
18339-18431
18533-18632
18633-18727
18733-18829
18931-19025
19030-19124
19226-19321
19325-19420
19426-19527
19628-19722
19728-19823
19921-20017
20018-20116
20119-20217
20318-20411
20417-20512
20518-20613
20716-20813
20814-20908
21105-21200
21006-21101
21203-21299
21402-21495
21501-21596
21602-21697
21797-21891
21894-21986
22088-22182
22188-22283
22286-22382
22484-22578
22584-22679
22685-22781
22881-22976
22978-23071
23270-23364
23170-23264
23368-23463
23566-23660
23666-23761
23767-23863
23963-24057
24060-24153
24252-24346
24352-24446
24450-24546
24648-24742
24748-24843
24849-24945
25045-25139
25142-25235
25335-25428
25434-25529
25532-25627
25731-25825
25831-25926
25932-26028
26128-26222
26225-26318
26417-26510
26614-26710
26516-26611
26812-26906
26912-27007
27013-27107
27207-27302
27304-27397
27499-27593
27697-27793
27599-27694
27895-27989
27995-28090
28096-28192
28295-28389
28392-28484
28583-28680
28686-28781
28784-28879
28982-29080
29081-29177
29180-29278
29378-29473
29475-29568
29670-29764
29770-29865
29868-29967
30070-30163
30169-30265
30271-30367
30467-30561
30564-30658
30761-30855
30861-30956
30962-31058
31158-31254
31258-31354
31360-31455
31653-31748
31754-31849
32051-32144
4
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
A:8-103
B:8-103
A:105-197
B:105-197
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3lpwa1 (A:1-102)
1b: SCOP_d3lpwa2 (A:103-197)
1c: SCOP_d3lpwb1 (B:3-102)
1d: SCOP_d3lpwb2 (B:103-197)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
automated matches
(32)
Protein domain
:
automated matches
(32)
Human (Homo sapiens) [TaxId: 9606]
(26)
1a
d3lpwa1
A:1-102
1b
d3lpwa2
A:103-197
1c
d3lpwb1
B:3-102
1d
d3lpwb2
B:103-197
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_fn3_3lpwB01 (B:104-187)
1b: PFAM_fn3_3lpwB02 (B:104-187)
1c: PFAM_fn3_3lpwB03 (B:104-187)
1d: PFAM_fn3_3lpwB04 (B:104-187)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
fn3
(66)
Homo sapiens (Human)
(52)
1a
fn3-3lpwB01
B:104-187
1b
fn3-3lpwB02
B:104-187
1c
fn3-3lpwB03
B:104-187
1d
fn3-3lpwB04
B:104-187
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (147 KB)
Header - Asym.Unit
Biol.Unit 1 (73 KB)
Header - Biol.Unit 1
Biol.Unit 2 (72 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3LPW
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
