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3LPP
Biol. Unit 1
Info
Asym.Unit (607 KB)
Biol.Unit 1 (160 KB)
Biol.Unit 2 (160 KB)
Biol.Unit 3 (159 KB)
Biol.Unit 4 (151 KB)
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(1)
Title
:
CRYSTAL COMPLEX OF N-TERMINAL SUCRASE-ISOMALTASE WITH KOTALANOL
Authors
:
L. Sim, D. R. Rose
Date
:
05 Feb 10 (Deposition) - 31 Mar 10 (Release) - 16 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Glycoside Hydrolase Family 31, Isomaltase, Alpha-Glucosidase, Cell Membrane, Disease Mutation, Disulfide Bond, Glycoprotein, Glycosidase, Hydrolase, Membrane, Multifunctional Enzyme, Polymorphism, Signal-Anchor, Sulfation, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Sim, C. Willemsma, S. Mohan, H. Y. Naim, B. M. Pinto, D. R. Rose
Structural Basis For Substrate Selectivity In Human Maltase-Glucoamylase And Sucrase-Isomaltase N-Terminal Domains.
J. Biol. Chem. V. 285 17763 2010
[
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Hetero Components
(5, 10)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: CHLORIDE ION (CLa)
3a: (1S,2R,3R,4S)-1-{(1S)-2-[(2R,3S,4S... (KTLa)
3b: (1S,2R,3R,4S)-1-{(1S)-2-[(2R,3S,4S... (KTLb)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
6b: DI(HYDROXYETHYL)ETHER (PEGb)
6c: DI(HYDROXYETHYL)ETHER (PEGc)
6d: DI(HYDROXYETHYL)ETHER (PEGd)
7a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
7b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
KTL
-1
Ligand/Ion
(1S,2R,3R,4S)-1-{(1S)-2-[(2R,3S,4S)-3,4-DIHYDROXY-2-(HYDROXYMETHYL)TETRAHYDROTHIOPHENIUM-1-YL]-1-HYDROXYETHYL}-2,3,4,5-TETRAHYDROXYPENTYL SULFATE
4
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
7
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:822 , NAG A:1002
BINDING SITE FOR RESIDUE NAG A 1001
02
AC2
SOFTWARE
TRP A:327 , ASP A:632 , TYR A:634 , NAG A:1001 , BMA A:1003
BINDING SITE FOR RESIDUE NAG A 1002
03
AC3
SOFTWARE
TYR A:634 , NAG A:1002 , MAN A:1004 , HOH A:1385 , HOH A:1484
BINDING SITE FOR RESIDUE BMA A 1003
04
AC4
SOFTWARE
ASP A:231 , GLN A:232 , TRP A:435 , PHE A:479 , LYS A:509 , BMA A:1003 , HOH A:1068 , HOH A:1726
BINDING SITE FOR RESIDUE MAN A 1004
05
AC5
SOFTWARE
ASN A:66 , HOH A:1283 , HOH A:1382 , GLN D:481
BINDING SITE FOR RESIDUE NAG A 2001
06
AC6
SOFTWARE
HIS A:418 , ASN A:422 , GLY A:426 , SER A:427 , VAL A:516 , HOH A:1165 , NAG A:3002
BINDING SITE FOR RESIDUE NAG A 3001
07
AC7
SOFTWARE
HIS A:418 , ASN A:448 , NAG A:3001
BINDING SITE FOR RESIDUE NAG A 3002
08
AC8
SOFTWARE
ASN A:871 , ASP A:885 , HOH A:1547 , HOH B:1238
BINDING SITE FOR RESIDUE NAG A 4001
09
AC9
SOFTWARE
TRP A:327 , ASP A:355 , ILE A:392 , TRP A:435 , ASP A:472 , PHE A:604 , HIS A:629 , HOH A:1000 , HOH A:1726
BINDING SITE FOR RESIDUE TRS A 6001
10
BC1
SOFTWARE
TYR A:732 , ILE A:784 , LYS A:846 , HOH A:1378
BINDING SITE FOR RESIDUE PEG A 7001
11
BC2
SOFTWARE
TRP A:318 , SER A:550
BINDING SITE FOR RESIDUE CL A 8001
12
CC9
SOFTWARE
ILE A:480 , GLN A:481 , ASN D:66 , HOH D:1615 , NAG D:2002
BINDING SITE FOR RESIDUE NAG D 2001
[
close Site info
]
SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_025368 (Q84R, chain A, )
2: VAR_025369 (A198A, chain A, )
3: VAR_025370 (L308P, chain A, )
4: VAR_025371 (V544G, chain A, )
5: VAR_025372 (S561P, chain A, )
6: VAR_025373 (L587P, chain A, )
7: VAR_025374 (T661P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_025368
Q
117
R
SUIS_HUMAN
Disease (CSID)
---
A
Q
84
R
2
UniProt
VAR_025369
T
231
A
SUIS_HUMAN
Polymorphism
9283633
A
A
198
A
3
UniProt
VAR_025370
L
341
P
SUIS_HUMAN
Disease (CSID)
---
A
L
308
P
4
UniProt
VAR_025371
V
577
G
SUIS_HUMAN
Disease (CSID)
121912615
A
V
544
G
5
UniProt
VAR_025372
S
594
P
SUIS_HUMAN
Disease (CSID)
---
A
S
561
P
6
UniProt
VAR_025373
L
620
P
SUIS_HUMAN
Disease (CSID)
---
A
L
587
P
7
UniProt
VAR_025374
T
694
P
SUIS_HUMAN
Disease (CSID)
---
A
T
661
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: P_TREFOIL_2 (A:29-77)
2: P_TREFOIL_1 (A:41-62)
3: GLYCOSYL_HYDROL_F31_1 (A:468-475)
4: GLYCOSYL_HYDROL_F31_2 (A:598-628)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
P_TREFOIL_2
PS51448
P-type 'Trefoil' domain profile.
SUIS_HUMAN
61-110
932-978
1
A:29-77
-
-
2
P_TREFOIL_1
PS00025
P-type 'Trefoil' domain signature.
SUIS_HUMAN
74-95
1
A:41-62
-
-
-
3
GLYCOSYL_HYDROL_F31_1
PS00129
Glycosyl hydrolases family 31 active site.
SUIS_HUMAN
501-508
1390-1397
1
A:468-475
-
-
-
-
4
GLYCOSYL_HYDROL_F31_2
PS00707
Glycosyl hydrolases family 31 signature 2.
SUIS_HUMAN
631-661
1527-1557
1
A:598-628
-
-
-
-
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_31_3lppD01 (D:290-764)
1b: PFAM_Glyco_hydro_31_3lppD02 (D:290-764)
1c: PFAM_Glyco_hydro_31_3lppD03 (D:290-764)
1d: PFAM_Glyco_hydro_31_3lppD04 (D:290-764)
2a: PFAM_Trefoil_3lppD05 (D:34-76)
2b: PFAM_Trefoil_3lppD06 (D:34-76)
2c: PFAM_Trefoil_3lppD07 (D:34-76)
2d: PFAM_Trefoil_3lppD08 (D:34-76)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Glyco_hydro_tim
(488)
Family
:
Glyco_hydro_31
(25)
Homo sapiens (Human)
(11)
1a
Glyco_hydro_31-3lppD01
D:290-764
1b
Glyco_hydro_31-3lppD02
D:290-764
1c
Glyco_hydro_31-3lppD03
D:290-764
1d
Glyco_hydro_31-3lppD04
D:290-764
Clan
:
no clan defined [family: Trefoil]
(14)
Family
:
Trefoil
(14)
Homo sapiens (Human)
(12)
2a
Trefoil-3lppD05
D:34-76
2b
Trefoil-3lppD06
D:34-76
2c
Trefoil-3lppD07
D:34-76
2d
Trefoil-3lppD08
D:34-76
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