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3LPH
Biol. Unit 1
Info
Asym.Unit (88 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (41 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HIV-1 REV DIMER
Authors
:
M. D. Daugherty
Date
:
05 Feb 10 (Deposition) - 08 Dec 10 (Release) - 08 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Helix-Loop-Helix, Rna-Binding Arginine Rich Motif, Protein Oligomerization, Aids, Host Cytoplasm, Host Nucleus, Host-Virus Interaction, Mrna Transport, Phosphoprotein, Rna-Binding, Transport, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
M. D. Daugherty, B. Liu, A. D. Frankel
Structural Basis For Cooperative Rna Binding And Export Complex Assembly By Hiv Rev.
Nat. Struct. Mol. Biol. V. 17 1337 2010
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
1i: BROMIDE ION (BRi)
1j: BROMIDE ION (BRj)
1k: BROMIDE ION (BRk)
1l: BROMIDE ION (BRl)
1m: BROMIDE ION (BRm)
2a: MALONATE ION (MLIa)
2b: MALONATE ION (MLIb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
BR
-1
Ligand/Ion
BROMIDE ION
2
MLI
2
Ligand/Ion
MALONATE ION
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC5 (SOFTWARE)
13: BC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:39 , ARG A:42 , ARG A:46 , HOH A:78 , HOH A:92 , ARG C:42 , ARG C:46
BINDING SITE FOR RESIDUE SO4 A 71
02
AC2
SOFTWARE
ARG A:41 , ARG A:44 , ARG A:48 , ARG B:58
BINDING SITE FOR RESIDUE SO4 A 72
03
AC3
SOFTWARE
ARG A:42 , MLI A:76
BINDING SITE FOR RESIDUE BR A 73
04
AC4
SOFTWARE
GLY A:65 , ARG D:60
BINDING SITE FOR RESIDUE BR D 71
05
AC5
SOFTWARE
HOH A:94
BINDING SITE FOR RESIDUE BR A 74
06
AC6
SOFTWARE
ALA A:37 , ASN A:40 , ARG A:43 , ARG A:44 , HOH A:82
BINDING SITE FOR RESIDUE BR A 75
07
AC7
SOFTWARE
THR B:34
BINDING SITE FOR RESIDUE BR B 71
08
AC8
SOFTWARE
ARG B:17 , HOH B:87
BINDING SITE FOR RESIDUE BR B 72
09
AC9
SOFTWARE
ARG B:60
BINDING SITE FOR RESIDUE BR B 73
10
BC1
SOFTWARE
ARG B:60 , LYS C:20
BINDING SITE FOR RESIDUE BR B 74
11
BC2
SOFTWARE
HOH B:88
BINDING SITE FOR RESIDUE BR D 72
12
BC5
SOFTWARE
PRO A:31 , ARG A:35 , ARG A:38 , ARG A:42 , BR A:73 , TRP C:45 , GLN C:49 , HIS C:53
BINDING SITE FOR RESIDUE MLI A 76
13
BC6
SOFTWARE
GLN B:36 , ALA B:37 , ASN B:40 , ARG B:44
BINDING SITE FOR RESIDUE MLI B 75
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_REV_3lphD01 (D:8-64)
1b: PFAM_REV_3lphD02 (D:8-64)
1c: PFAM_REV_3lphD03 (D:8-64)
1d: PFAM_REV_3lphD04 (D:8-64)
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Clans
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)
(
)
Clan
:
no clan defined [family: REV]
(4)
Family
:
REV
(4)
Human immunodeficiency virus type 1 group M subtype B (isolate HXB3) (HIV-1)
(1)
1a
REV-3lphD01
D:8-64
1b
REV-3lphD02
D:8-64
1c
REV-3lphD03
D:8-64
1d
REV-3lphD04
D:8-64
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Asym.Unit (88 KB)
Header - Asym.Unit
Biol.Unit 1 (43 KB)
Header - Biol.Unit 1
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