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3LP9
Biol. Unit 2
Info
Asym.Unit (161 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (80 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LS24, A SEED ALBUMIN FROM LATHYRUS SATIVUS
Authors
:
V. Gaur, I. A. Qureshi, A. Singh, V. Chanana, D. M. Salunke
Date
:
05 Feb 10 (Deposition) - 23 Feb 10 (Release) - 21 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Seed Albumin, Plant Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Gaur, I. A. Qureshi, A. Singh, V. Chanana, D. M. Salunke
Crystal Structure And Functional Insights Of Hemopexin Fold Protein From Grass Pea
Plant Physiol. V. 152 1842 2010
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
4a: SPERMINE (SPMa)
5a: (UNKa)
5b: (UNKb)
5c: (UNKc)
5d: (UNKd)
5e: (UNKe)
5f: (UNKf)
5g: (UNKg)
5h: (UNKh)
5i: (UNKi)
5j: (UNKj)
5k: (UNKk)
5l: (UNKl)
View:
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
NA
-1
Ligand/Ion
SODIUM ION
4
SPM
1
Ligand/Ion
SPERMINE
5
UNK
-1
Mod. Amino Acid
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Sites
(7, 7)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC2 (SOFTWARE)
6: BC3 (SOFTWARE)
7: BC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
THR B:1 , ASN B:7 , ASP B:65 , ASP B:121 , ASP B:175 , HOH B:308
BINDING SITE FOR RESIDUE CA B 311
2
AC5
SOFTWARE
ALA B:9 , SER B:67 , ALA B:123 , ALA B:177
BINDING SITE FOR RESIDUE CL B 315
3
AC6
SOFTWARE
ASP B:69 , ARG B:125 , ALA B:179
BINDING SITE FOR RESIDUE NA B 319
4
BC1
SOFTWARE
ASN D:7 , ASP D:65 , ASP D:121 , ASP D:175 , HOH D:446
BINDING SITE FOR RESIDUE CA D 313
5
BC2
SOFTWARE
ALA D:9 , SER D:67 , ALA D:123 , ALA D:177
BINDING SITE FOR RESIDUE CL D 317
6
BC3
SOFTWARE
ASP D:69 , TYR D:124 , ARG D:125 , PHE D:178 , ALA D:179 , HOH D:455
BINDING SITE FOR RESIDUE NA D 321
7
BC4
SOFTWARE
GLU B:80 , HOH B:244 , HOH B:332 , ASN D:81 , SER D:118 , HOH D:282 , HOH D:435 , HOH D:436
BINDING SITE FOR RESIDUE SPM D 230
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: HEMOPEXIN_2 (B:3-46,B:61-111,B:117-165,B:171-22...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEMOPEXIN_2
PS51642
Hemopexin repeat profile.
ALB2_LATSA
3-46
61-111
117-165
171-221
8
-
B:3-46
-
D:3-46
-
B:61-111
-
D:61-111
-
B:117-165
-
D:117-165
-
B:171-221
-
D:171-221
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Hemopexin_3lp9D01 (D:175-223)
1b: PFAM_Hemopexin_3lp9D02 (D:175-223)
1c: PFAM_Hemopexin_3lp9D03 (D:175-223)
1d: PFAM_Hemopexin_3lp9D04 (D:175-223)
1e: PFAM_Hemopexin_3lp9D05 (D:175-223)
1f: PFAM_Hemopexin_3lp9D06 (D:175-223)
1g: PFAM_Hemopexin_3lp9D07 (D:175-223)
1h: PFAM_Hemopexin_3lp9D08 (D:175-223)
1i: PFAM_Hemopexin_3lp9D09 (D:175-223)
1j: PFAM_Hemopexin_3lp9D10 (D:175-223)
1k: PFAM_Hemopexin_3lp9D11 (D:175-223)
1l: PFAM_Hemopexin_3lp9D12 (D:175-223)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Hemopexin]
(5)
Family
:
Hemopexin
(5)
Lathyrus sativus (Chickling vetch)
(1)
1a
Hemopexin-3lp9D01
D:175-223
1b
Hemopexin-3lp9D02
D:175-223
1c
Hemopexin-3lp9D03
D:175-223
1d
Hemopexin-3lp9D04
D:175-223
1e
Hemopexin-3lp9D05
D:175-223
1f
Hemopexin-3lp9D06
D:175-223
1g
Hemopexin-3lp9D07
D:175-223
1h
Hemopexin-3lp9D08
D:175-223
1i
Hemopexin-3lp9D09
D:175-223
1j
Hemopexin-3lp9D10
D:175-223
1k
Hemopexin-3lp9D11
D:175-223
1l
Hemopexin-3lp9D12
D:175-223
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Asymmetric Unit 1
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Asym.Unit (161 KB)
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