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3LP7
Biol. Unit 1
Info
Asym.Unit (108 KB)
Biol.Unit 1 (154 KB)
Biol.Unit 2 (152 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ARGINASE I IN COMPLEX WITH INHIBITOR N(OMEGA)-HYDROXY-L-ARGININE (NOHA), 2.04A RESOLUTION
Authors
:
L. Di Costanzo, D. W. Christianson
Date
:
04 Feb 10 (Deposition) - 23 Feb 10 (Release) - 09 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.04
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Keywords
:
Noha Inhibition, Manganese Cluster, Alternative Splicing, Arginine Metabolism, Cytoplasm, Disease Mutation, Hydrolase, Manganese, Metal-Binding, Phosphoprotein, Polymorphism, Urea Cycle
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
L. Di Costanzo, M. Ilies, K. J. Thorn, D. W. Christianson
Inhibition Of Human Arginase I By Substrate And Product Analogues.
Arch. Biochem. Biophys. V. 496 101 2010
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: N-OMEGA-HYDROXY-L-ARGININE (HARa)
1b: N-OMEGA-HYDROXY-L-ARGININE (HARb)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HAR
3
Ligand/Ion
N-OMEGA-HYDROXY-L-ARGININE
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:124 , HIS A:126 , ASP A:232 , ASP A:234 , MN A:515 , HAR A:906
BINDING SITE FOR RESIDUE MN A 514
2
AC2
SOFTWARE
HIS A:101 , ASP A:124 , ASP A:128 , ASP A:232 , MN A:514 , HAR A:906
BINDING SITE FOR RESIDUE MN A 515
3
AC3
SOFTWARE
ASP A:124 , HIS A:126 , ASP A:128 , ASN A:130 , SER A:137 , HIS A:141 , ASP A:183 , GLU A:186 , ASP A:232 , ASP A:234 , THR A:246 , GLU A:277 , HOH A:326 , HOH A:327 , HOH A:373 , HOH A:406 , MN A:514 , MN A:515
BINDING SITE FOR RESIDUE HAR A 906
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SAPs(SNPs)/Variants
(10, 30)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_015594 (I11T, chain A, )
02: VAR_072164 (G27D, chain A, )
03: VAR_072165 (G74V, chain A, )
04: VAR_072166 (A125V, chain A, )
05: VAR_072167 (T134I, chain A, )
06: VAR_015595 (G138V, chain A, )
07: VAR_072168 (R180T, chain A, )
08: VAR_000674 (G235R, chain A, )
09: VAR_000675 (T290S, chain A, )
10: VAR_072169 (R308Q, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_015594
I
11
T
ARGI1_HUMAN
Disease (ARGIN)
28941474
A
I
11
T
02
UniProt
VAR_072164
G
27
D
ARGI1_HUMAN
Disease (ARGIN)
---
A
G
27
D
03
UniProt
VAR_072165
G
74
V
ARGI1_HUMAN
Disease (ARGIN)
---
A
G
74
V
04
UniProt
VAR_072166
A
125
V
ARGI1_HUMAN
Disease (ARGIN)
---
A
A
125
V
05
UniProt
VAR_072167
T
134
I
ARGI1_HUMAN
Disease (ARGIN)
---
A
T
134
I
06
UniProt
VAR_015595
G
138
V
ARGI1_HUMAN
Disease (ARGIN)
---
A
G
138
V
07
UniProt
VAR_072168
R
180
T
ARGI1_HUMAN
Disease (ARGIN)
---
A
R
180
T
08
UniProt
VAR_000674
G
235
R
ARGI1_HUMAN
Disease (ARGIN)
---
A
G
235
R
09
UniProt
VAR_000675
T
290
S
ARGI1_HUMAN
Polymorphism
---
A
T
290
S
10
UniProt
VAR_072169
R
308
Q
ARGI1_HUMAN
Disease (ARGIN)
---
A
R
308
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: ARGINASE_1 (A:230-251)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGINASE_1
PS01053
Arginase family signature.
ARGI1_HUMAN
230-251
3
A:230-251
-
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3lp7a_ (A:)
1b: SCOP_d3lp7b_ (B:)
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)
Protein Domains
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)
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)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
Arginase-like amidino hydrolases
(97)
Protein domain
:
Arginase
(73)
Human (Homo sapiens) [TaxId: 9606]
(26)
1a
d3lp7a_
A:
1b
d3lp7b_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Arginase_3lp7B01 (B:6-305)
1b: PFAM_Arginase_3lp7B02 (B:6-305)
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Clan
:
Arginase
(56)
Family
:
Arginase
(37)
Homo sapiens (Human)
(11)
1a
Arginase-3lp7B01
B:6-305
1b
Arginase-3lp7B02
B:6-305
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