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3LOE
Asym. Unit
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Asym.Unit (11 KB)
Biol.Unit 1 (7 KB)
Biol.Unit 2 (9 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ALPHA-DEFENSIN 1 (F28A MUTANT)
Authors
:
M. Pazgier, W. Lu
Date
:
03 Feb 10 (Deposition) - 09 Mar 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.56
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Antimicrobial Peptide, Human Alpha Defensin 1, Human Neutrophil Peptide 1, Hnp1, Antibiotic, Antimicrobial, Antiviral Defense, Defensin, Disulfide Bond, Fungicide, Phosphoprotein, Secreted, Antimicrobial Protein
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Reference
:
G. Wei, M. Pazgier, E. De Leeuw, M. Rajabi, J. Li, G. Zou, G. Jung, W. Yuan, W. Y. Lu, R. I. Lehrer, W. Lu
Trp-26 Imparts Functional Versatility To Human Alpha-Defensin Hnp1.
J. Biol. Chem. V. 285 16275 2010
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Hetero Components
(2, 2)
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All Hetero Components
1a: GLYCEROL (GOLa)
2a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:8 , CYS A:9 , ARG A:14 , ARG A:15 , ARG A:24 , HOH A:46 , HOH A:47 , HOH A:49
BINDING SITE FOR RESIDUE SO4 A 31
2
AC2
SOFTWARE
PRO A:7 , ARG A:15 , LEU A:25 , TRP A:26 , ALA A:27 , HOH A:69
BINDING SITE FOR RESIDUE GOL A 32
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PROSITE Patterns/Profiles
(1, 1)
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1: DEFENSIN (A:2-30)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DEFENSIN
PS00269
Mammalian defensins signature.
DEF1_HUMAN
66-94
1
A:2-30
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Exons
(1, 1)
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Exon 1.6a (A:1-30)
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1: Boundary 1.5a/1.6a
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ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4
ENST00000382692
4
ENSE00001493017
chr8:
6837602-6837535
68
DEF1_HUMAN
-
0
0
-
-
1.5a
ENST00000382692
5a
ENSE00001645348
chr8:
6836168-6835982
187
DEF1_HUMAN
1-59
59
0
-
-
1.6a
ENST00000382692
6a
ENSE00001493014
chr8:
6835401-6835172
230
DEF1_HUMAN
59-94
36
1
A:1-30
30
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_Defensin_1_3loeA01 (A:2-30)
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Clan
:
Defensin
(30)
Family
:
Defensin_1
(14)
Homo sapiens (Human)
(14)
1a
Defensin_1-3loeA01
A:2-30
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Chain A
Asymmetric Unit 1
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