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3LNM
Asym. Unit
Info
Asym.Unit (242 KB)
Biol.Unit 1 (429 KB)
Biol.Unit 2 (483 KB)
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(1)
Title
:
F233W MUTANT OF THE KV2.1 PADDLE-KV1.2 CHIMERA CHANNEL
Authors
:
X. Tao, A. Lee, W. Limapichat, D. A. Dougherty, R. Mackinnon
Date
:
02 Feb 10 (Deposition) - 14 Apr 10 (Release) - 14 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (4x)
Biol. Unit 2: B,C (4x)
Keywords
:
Voltage-Gated Potassium Channel-Beta Subunit Complex, Acetylation, Cytoplasm, Ion Transport, Ionic Channel, Nadp, Phosphoprotein, Potassium, Potassium Transport, Transport, Voltage-Gated Channel, Glycoprotein, Lipoprotein, Membrane, Palmitate, Potassium Channel, Transmembrane, Membrane Protein, Transport Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Tao, A. Lee, W. Limapichat, D. A. Dougherty, R. Mackinnon
A Gating Charge Transfer Center In Voltage Sensors.
Science V. 328 67 2010
[
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Hetero Components
(3, 25)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
1c: POTASSIUM ION (Kc)
1d: POTASSIUM ION (Kd)
1e: POTASSIUM ION (Ke)
1f: POTASSIUM ION (Kf)
1g: POTASSIUM ION (Kg)
1h: POTASSIUM ION (Kh)
1i: POTASSIUM ION (Ki)
1j: POTASSIUM ION (Kj)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
3a: (1R)-2-{[(S)-{[(2S)-2,3-DIHYDROXYP... (PGWa)
3b: (1R)-2-{[(S)-{[(2S)-2,3-DIHYDROXYP... (PGWb)
3c: (1R)-2-{[(S)-{[(2S)-2,3-DIHYDROXYP... (PGWc)
3d: (1R)-2-{[(S)-{[(2S)-2,3-DIHYDROXYP... (PGWd)
3e: (1R)-2-{[(S)-{[(2S)-2,3-DIHYDROXYP... (PGWe)
3f: (1R)-2-{[(S)-{[(2S)-2,3-DIHYDROXYP... (PGWf)
3g: (1R)-2-{[(S)-{[(2S)-2,3-DIHYDROXYP... (PGWg)
3h: (1R)-2-{[(S)-{[(2S)-2,3-DIHYDROXYP... (PGWh)
3i: (1R)-2-{[(S)-{[(2S)-2,3-DIHYDROXYP... (PGWi)
3j: (1R)-2-{[(S)-{[(2S)-2,3-DIHYDROXYP... (PGWj)
3k: (1R)-2-{[(S)-{[(2S)-2,3-DIHYDROXYP... (PGWk)
3l: (1R)-2-{[(S)-{[(2S)-2,3-DIHYDROXYP... (PGWl)
3m: (1R)-2-{[(S)-{[(2S)-2,3-DIHYDROXYP... (PGWm)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
10
Ligand/Ion
POTASSIUM ION
2
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3
PGW
13
Ligand/Ion
(1R)-2-{[(S)-{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(HEXADECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE
[
close Hetero Component info
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:55 , THR A:56 , TRP A:57 , GLN A:63 , ASP A:85 , TYR A:90 , LYS A:118 , ASN A:158 , SER A:188 , ARG A:189 , GLN A:214 , TRP A:243 , SER A:244 , PRO A:245 , LEU A:246 , ALA A:247 , CYS A:248 , GLY A:249 , LYS A:254 , SER A:263 , ARG A:264 , LEU A:321 , GLY A:323 , SER A:325 , GLN A:329 , GLU A:332 , ASN A:333 , HOH A:2036
BINDING SITE FOR RESIDUE NAP A 1001
02
AC2
SOFTWARE
ILE B:328 , PRO B:358 , PHE B:361 , TRP B:362 , LYS B:384 , SER B:388 , PGW B:605
BINDING SITE FOR RESIDUE PGW B 601
03
AC3
SOFTWARE
HOH B:2130
BINDING SITE FOR RESIDUE PGW B 602
04
AC4
SOFTWARE
VAL B:178 , PGW B:601
BINDING SITE FOR RESIDUE PGW B 605
05
AC5
SOFTWARE
THR B:397 , PGW B:609
BINDING SITE FOR RESIDUE PGW B 606
06
AC6
SOFTWARE
SER B:307 , LYS B:308 , GLY B:309 , ARG B:322 , LEU B:326 , PHE B:329
BINDING SITE FOR RESIDUE PGW B 608
07
AC7
SOFTWARE
PHE B:330 , THR B:397 , PGW B:606
BINDING SITE FOR RESIDUE PGW B 609
08
AC8
SOFTWARE
ILE B:254 , MET B:255 , LYS B:308 , GLN B:311 , GLY B:314 , GLN B:315 , LYS B:318 , ARG B:415
BINDING SITE FOR RESIDUE PGW B 610
09
AC9
SOFTWARE
GLN B:214 , SER B:215 , THR B:216 , ILE B:231
BINDING SITE FOR RESIDUE PGW B 611
10
BC1
SOFTWARE
PHE B:218
BINDING SITE FOR RESIDUE PGW B 612
11
BC2
SOFTWARE
GLY B:372 , TYR B:373
BINDING SITE FOR RESIDUE K B 501
12
BC3
SOFTWARE
VAL B:371 , GLY B:372 , K B:503
BINDING SITE FOR RESIDUE K B 502
13
BC4
SOFTWARE
THR B:370 , VAL B:371 , K B:502
BINDING SITE FOR RESIDUE K B 503
14
BC5
SOFTWARE
THR B:370
BINDING SITE FOR RESIDUE K B 504
15
BC6
SOFTWARE
GLY C:55 , THR C:56 , TRP C:57 , GLN C:63 , ASP C:85 , TYR C:90 , ASN C:158 , SER C:188 , ARG C:189 , GLN C:214 , TRP C:243 , SER C:244 , PRO C:245 , LEU C:246 , ALA C:247 , CYS C:248 , GLY C:249 , SER C:252 , LYS C:254 , TYR C:262 , SER C:263 , ARG C:264 , LEU C:321 , GLY C:323 , SER C:325 , GLN C:329 , GLU C:332 , ASN C:333 , HOH C:2028 , HOH C:2038
BINDING SITE FOR RESIDUE NAP C 1001
16
BC7
SOFTWARE
PRO D:358 , PHE D:361 , TRP D:362 , VAL D:365 , ILE D:381 , LYS D:384 , SER D:388
BINDING SITE FOR RESIDUE PGW D 601
17
BC8
SOFTWARE
GLY D:372 , TYR D:373 , K D:502
BINDING SITE FOR RESIDUE K D 501
18
BC9
SOFTWARE
VAL D:371 , GLY D:372 , K D:501
BINDING SITE FOR RESIDUE K D 502
19
CC1
SOFTWARE
THR D:370 , VAL D:371 , K D:504
BINDING SITE FOR RESIDUE K D 503
20
CC2
SOFTWARE
THR D:370 , K D:503
BINDING SITE FOR RESIDUE K D 504
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(14, 28)
Info
All Exons
Exon 1.3 (A:36-40 | C:36-40)
Exon 1.4 (A:40-55 | C:40-55)
Exon 1.5 (A:55-67 | C:55-67)
Exon 1.6 (A:68-94 | C:68-94)
Exon 1.7 (A:94-109 | C:94-109)
Exon 1.8 (A:109-124 | C:109-124)
Exon 1.9 (A:124-139 | C:124-139)
Exon 1.10 (A:139-168 | C:139-168)
Exon 1.11 (A:168-196 | C:168-196)
Exon 1.12 (A:197-237 | C:197-237)
Exon 1.13 (A:237-268 | C:237-268)
Exon 1.14 (A:269-309 | C:269-309)
Exon 1.15 (A:309-338 | C:309-338)
Exon 1.16 (A:339-361 | C:339-361)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13
12: Boundary 1.13/1.14
13: Boundary 1.14/1.15
14: Boundary 1.15/1.16
15: Boundary 1.16/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000015840
1
ENSRNOE00000308500
chr5:
169710725-169710296
430
KCAB2_RAT
-
0
0
-
-
1.2
ENSRNOT00000015840
2
ENSRNOE00000112803
chr5:
169670219-169670091
129
KCAB2_RAT
1-26
26
0
-
-
1.3
ENSRNOT00000015840
3
ENSRNOE00000109396
chr5:
169668964-169668923
42
KCAB2_RAT
26-40
15
2
A:36-40
C:36-40
5
5
1.4
ENSRNOT00000015840
4
ENSRNOE00000109593
chr5:
169644460-169644417
44
KCAB2_RAT
40-55
16
2
A:40-55
C:40-55
16
16
1.5
ENSRNOT00000015840
5
ENSRNOE00000112181
chr5:
169643660-169643623
38
KCAB2_RAT
55-67
13
2
A:55-67
C:55-67
13
13
1.6
ENSRNOT00000015840
6
ENSRNOE00000112310
chr5:
169638175-169638096
80
KCAB2_RAT
68-94
27
2
A:68-94
C:68-94
27
27
1.7
ENSRNOT00000015840
7
ENSRNOE00000109963
chr5:
169635470-169635426
45
KCAB2_RAT
94-109
16
2
A:94-109
C:94-109
16
16
1.8
ENSRNOT00000015840
8
ENSRNOE00000110175
chr5:
169633990-169633946
45
KCAB2_RAT
109-124
16
2
A:109-124
C:109-124
16
16
1.9
ENSRNOT00000015840
9
ENSRNOE00000112448
chr5:
169632945-169632902
44
KCAB2_RAT
124-139
16
2
A:124-139
C:124-139
16
16
1.10
ENSRNOT00000015840
10
ENSRNOE00000112513
chr5:
169632029-169631943
87
KCAB2_RAT
139-168
30
2
A:139-168
C:139-168
30
30
1.11
ENSRNOT00000015840
11
ENSRNOE00000110546
chr5:
169628084-169627999
86
KCAB2_RAT
168-196
29
2
A:168-196
C:168-196
29
29
1.12
ENSRNOT00000015840
12
ENSRNOE00000110711
chr5:
169626318-169626198
121
KCAB2_RAT
197-237
41
2
A:197-237
C:197-237
41
41
1.13
ENSRNOT00000015840
13
ENSRNOE00000110885
chr5:
169626108-169626014
95
KCAB2_RAT
237-268
32
2
A:237-268
C:237-268
32
32
1.14
ENSRNOT00000015840
14
ENSRNOE00000111076
chr5:
169625453-169625333
121
KCAB2_RAT
269-309
41
2
A:269-309
C:269-309
41
41
1.15
ENSRNOT00000015840
15
ENSRNOE00000111256
chr5:
169624855-169624767
89
KCAB2_RAT
309-338
30
2
A:309-338
C:309-338
30
30
1.16
ENSRNOT00000015840
16
ENSRNOE00000111460
chr5:
169624192-169624099
94
KCAB2_RAT
339-367
29
2
A:339-361
C:339-361
23
23
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3lnma_ (A:)
1b: SCOP_d3lnmc_ (C:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
Voltage-dependent K+ channel beta subunit
(11)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(11)
1a
d3lnma_
A:
1b
d3lnmc_
C:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Ion_trans_3lnmD01 (D:224-405)
1b: PFAM_Ion_trans_3lnmD02 (D:224-405)
2a: PFAM_K_tetra_3lnmD03 (D:35-126)
2b: PFAM_K_tetra_3lnmD04 (D:35-126)
3a: PFAM_Aldo_ket_red_3lnmC01 (C:51-356)
3b: PFAM_Aldo_ket_red_3lnmC02 (C:51-356)
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Clans
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Organisms
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)
Clan
:
Ion_channel
(150)
Family
:
Ion_trans
(5)
Rattus norvegicus (Rat)
(3)
1a
Ion_trans-3lnmD01
D:224-405
1b
Ion_trans-3lnmD02
D:224-405
Clan
:
POZ
(36)
Family
:
K_tetra
(6)
Rattus norvegicus (Rat)
(4)
2a
K_tetra-3lnmD03
D:35-126
2b
K_tetra-3lnmD04
D:35-126
Clan
:
no clan defined [family: Aldo_ket_red]
(94)
Family
:
Aldo_ket_red
(94)
Rattus norvegicus (Rat)
(6)
3a
Aldo_ket_red-3lnmC01
C:51-356
3b
Aldo_ket_red-3lnmC02
C:51-356
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Asym.Unit (242 KB)
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