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3LN4
Asym. Unit
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Asym.Unit (164 KB)
Biol.Unit 1 (160 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HLA-B*4103 IN COMPLEX WITH A 16MER SELF-PEPTIDE DERIVED FROM HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEINS C1/C2
Authors
:
A. Theodossis, S. Gras, J. Rossjohn
Date
:
01 Feb 10 (Deposition) - 20 Oct 10 (Release) - 12 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Immunoglobulin Domain, Immune Response, Major Histocompatibility Complex Class I, Mhc-I Peptide Complex, Peptide-Binding Motifs, Disulfide Bond, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Bade-Doding, A. Theodossis, S. Gras, L. Kjer-Nielsen, B. Eiz-Vesper, A. Seltsam, T. Huyton, J. Rossjohn, J. Mccluskey, R. Blasczyk
The Impact Of Human Leukocyte Antigen (Hla) Micropolymorphism On Ligand Specificity Within The Hla-B*41 Allotypic Family
Haematologica V. 96 110 2011
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:243 , HOH A:368 , HOH A:392
BINDING SITE FOR RESIDUE ACT A 275
2
AC2
SOFTWARE
SER A:92 , HIS A:93 , ASP A:119 , HOH A:350 , HOH A:538
BINDING SITE FOR RESIDUE ACT A 276
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_016459 (N80K, chain A, )
2: VAR_016455 (L95L, chain A, )
3: VAR_016456 (R97S, chain A, )
4: VAR_016457 (V103L, chain A, )
5: VAR_016458 (N114D, chain A, )
6: VAR_056369 (R131S, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016459
N
104
K
1B41_HUMAN
Polymorphism
---
A
N
80
K
2
UniProt
VAR_016455
W
119
L
1B41_HUMAN
Polymorphism
---
A
L
95
L
3
UniProt
VAR_016456
R
121
S
1B41_HUMAN
Polymorphism
---
A
R
97
S
4
UniProt
VAR_016457
V
127
L
1B41_HUMAN
Polymorphism
---
A
V
103
L
5
UniProt
VAR_016458
N
138
D
1B41_HUMAN
Polymorphism
---
A
N
114
D
6
UniProt
VAR_056369
R
155
S
1B41_HUMAN
Polymorphism
1050654
A
R
131
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,A:257-263)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
1
B:78-84
1B41_HUMAN
281-287
1
A:257-263
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3ln4b_ (B:)
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(
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)
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)
(
)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d3ln4b_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_C1_set_3ln4A01 (A:186-271)
1b: PFAM_C1_set_3ln4B01 (B:11-92)
2a: PFAM_MHC_I_3ln4A02 (A:1-179)
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Organisms
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)
(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Homo sapiens (Human)
(218)
1a
C1-set-3ln4A01
A:186-271
1b
C1-set-3ln4B01
B:11-92
Clan
:
MHC
(252)
Family
:
MHC_I
(210)
Homo sapiens (Human)
(144)
2a
MHC_I-3ln4A02
A:1-179
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Asymmetric Unit 1
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Asym.Unit (164 KB)
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