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3LN1
Asym. Unit
Info
Asym.Unit (382 KB)
Biol.Unit 1 (189 KB)
Biol.Unit 2 (189 KB)
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(1)
Title
:
STRUCTURE OF CELECOXIB BOUND AT THE COX-2 ACTIVE SITE
Authors
:
J. R. Kiefer, R. G. Kurumbail, W. C. Stallings, J. L. Pawlitz
Date
:
01 Feb 10 (Deposition) - 27 Oct 10 (Release) - 01 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Cox2, Cox-2, Pgh2S-2, Cyclooxygenase-2, Dioxygenase, Disulfide Bond, Endoplasmic Reticulum, Fatty Acid Biosynthesis, Glycoprotein, Heme, Iron, Lipid Synthesis, Membrane, Metal-Binding, Microsome, Oxidoreductase, Peroxidase, Phosphoprotein, Prostaglandin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. L. Wang, D. Limburg, M. J. Graneto, J. Springer, J. R. Hamper, S. Liao J. L. Pawlitz, R. G. Kurumbail, T. Maziasz, J. J. Talley, J. R. Kiefer, J. Carter
The Novel Benzopyran Class Of Selective Cyclooxygenase-2 Inhibitors. Part 2: The Second Clinical Candidate Having A Shorter And Favorable Human Half-Life.
Bioorg. Med. Chem. Lett. V. 20 7159 2010
[
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Hetero Components
(4, 30)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
2a: 4-[5-(4-METHYLPHENYL)-3-(TRIFLUORO... (CELa)
2b: 4-[5-(4-METHYLPHENYL)-3-(TRIFLUORO... (CELb)
2c: 4-[5-(4-METHYLPHENYL)-3-(TRIFLUORO... (CELc)
2d: 4-[5-(4-METHYLPHENYL)-3-(TRIFLUORO... (CELd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
2
Ligand/Ion
B-OCTYLGLUCOSIDE
2
CEL
4
Ligand/Ion
4-[5-(4-METHYLPHENYL)-3-(TRIFLUOROMETHYL)-1H-PYRAZOL-1-YL]BENZENESULFONAMIDE
3
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NAG
20
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:40 , GLU A:52 , ASN A:53
BINDING SITE FOR RESIDUE NAG A 661
02
AC2
SOFTWARE
GLU A:126 , ASN A:130 , TYR A:133 , ARG A:202 , HOH A:613 , NAG A:672
BINDING SITE FOR RESIDUE NAG A 671
03
AC3
SOFTWARE
ARG A:202 , NAG A:671 , NAG A:673 , ASP B:225
BINDING SITE FOR RESIDUE NAG A 672
04
AC4
SOFTWARE
NAG A:672
BINDING SITE FOR RESIDUE NAG A 673
05
AC5
SOFTWARE
GLN A:392 , ASN A:396 , ILE A:399
BINDING SITE FOR RESIDUE NAG A 681
06
AC6
SOFTWARE
HOH A:7 , ALA A:185 , PHE A:186 , GLN A:189 , HIS A:193 , PHE A:196 , LYS A:197 , THR A:198 , HIS A:200 , VAL A:281 , ASN A:368 , TYR A:371 , HIS A:372 , HIS A:374 , LEU A:394 , VAL A:433
BINDING SITE FOR RESIDUE HEM A 605
07
AC7
SOFTWARE
HIS A:75 , ARG A:106 , GLN A:178 , VAL A:335 , LEU A:338 , SER A:339 , TYR A:341 , LEU A:345 , TYR A:371 , TRP A:373 , ARG A:499 , PHE A:504 , VAL A:509 , GLY A:512 , ALA A:513 , LEU A:517
BINDING SITE FOR RESIDUE CEL A 682
08
AC8
SOFTWARE
GLU A:165 , ARG A:170 , ARG A:171 , ILE A:428 , GLN A:431 , HOH A:628 , LYS B:166 , ARG B:171 , ARG B:424 , GLU B:472 , GLU B:476
BINDING SITE FOR RESIDUE BOG A 703
09
AC9
SOFTWARE
TYR B:40 , GLU B:52 , ASN B:53
BINDING SITE FOR RESIDUE NAG B 661
10
BC1
SOFTWARE
ASN B:130 , TYR B:133 , ARG B:202 , HOH B:624 , NAG B:672
BINDING SITE FOR RESIDUE NAG B 671
11
BC2
SOFTWARE
ASP A:225 , ARG B:202 , NAG B:671 , NAG B:673
BINDING SITE FOR RESIDUE NAG B 672
12
BC3
SOFTWARE
NAG B:672
BINDING SITE FOR RESIDUE NAG B 673
13
BC4
SOFTWARE
GLN B:392 , ASN B:396 , ILE B:399
BINDING SITE FOR RESIDUE NAG B 681
14
BC5
SOFTWARE
ALA B:185 , PHE B:186 , ALA B:188 , GLN B:189 , HIS B:193 , PHE B:196 , LYS B:197 , THR B:198 , VAL B:281 , ASN B:368 , TYR B:371 , HIS B:372 , HIS B:374 , LEU B:377
BINDING SITE FOR RESIDUE HEM B 605
15
BC6
SOFTWARE
HIS B:75 , GLN B:178 , VAL B:335 , LEU B:338 , SER B:339 , TYR B:341 , TYR B:371 , TRP B:373 , ARG B:499 , PHE B:504 , VAL B:509 , SER B:516 , LEU B:517
BINDING SITE FOR RESIDUE CEL B 682
16
BC7
SOFTWARE
SER C:23 , TYR C:40 , GLU C:52 , ASN C:53
BINDING SITE FOR RESIDUE NAG C 661
17
BC8
SOFTWARE
GLU C:126 , ASN C:130 , ARG C:202 , HOH C:615 , NAG C:672
BINDING SITE FOR RESIDUE NAG C 671
18
BC9
SOFTWARE
ARG C:202 , NAG C:671 , NAG C:673 , ASP D:225
BINDING SITE FOR RESIDUE NAG C 672
19
CC1
SOFTWARE
NAG C:672
BINDING SITE FOR RESIDUE NAG C 673
20
CC2
SOFTWARE
GLN C:392 , ASN C:396 , SER C:398 , ILE C:399
BINDING SITE FOR RESIDUE NAG C 681
21
CC3
SOFTWARE
ALA C:185 , PHE C:186 , GLN C:189 , HIS C:193 , PHE C:196 , LYS C:197 , THR C:198 , HIS C:200 , VAL C:281 , ASN C:368 , TYR C:371 , HIS C:372 , HIS C:374 , VAL C:433
BINDING SITE FOR RESIDUE HEM C 605
22
CC4
SOFTWARE
HIS C:75 , ARG C:106 , GLN C:178 , VAL C:335 , LEU C:338 , SER C:339 , TYR C:341 , LEU C:345 , TYR C:371 , TRP C:373 , ARG C:499 , PHE C:504 , VAL C:509 , ALA C:513 , LEU C:517
BINDING SITE FOR RESIDUE CEL C 682
23
CC5
SOFTWARE
SER D:23 , TYR D:40 , GLU D:52 , ASN D:53
BINDING SITE FOR RESIDUE NAG D 661
24
CC6
SOFTWARE
ASN D:130 , TYR D:133 , ARG D:202 , HOH D:618 , NAG D:672
BINDING SITE FOR RESIDUE NAG D 671
25
CC7
SOFTWARE
ASP C:225 , ARG D:202 , NAG D:671 , NAG D:673
BINDING SITE FOR RESIDUE NAG D 672
26
CC8
SOFTWARE
NAG D:672
BINDING SITE FOR RESIDUE NAG D 673
27
CC9
SOFTWARE
TYR D:388 , GLN D:392 , ASN D:396 , ILE D:399
BINDING SITE FOR RESIDUE NAG D 681
28
DC1
SOFTWARE
TYR D:134 , ALA D:185 , ALA D:188 , GLN D:189 , HIS D:193 , PHE D:196 , LYS D:197 , THR D:198 , HIS D:200 , ASN D:368 , HIS D:372 , HIS D:374 , LEU D:377 , VAL D:433
BINDING SITE FOR RESIDUE HEM D 605
29
DC2
SOFTWARE
HIS D:75 , ARG D:106 , GLN D:178 , VAL D:335 , LEU D:338 , SER D:339 , TYR D:341 , LEU D:345 , TRP D:373 , ARG D:499 , PHE D:504 , VAL D:509 , GLY D:512 , ALA D:513 , LEU D:517
BINDING SITE FOR RESIDUE CEL D 682
30
DC3
SOFTWARE
GLU C:165 , ARG C:170 , ILE C:428 , GLN C:431 , LYS D:166 , ARG D:171 , ARG D:424 , GLU D:472 , GLU D:476
BINDING SITE FOR RESIDUE BOG D 703
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (A:96-569,B:96-569,C:96-569,D:96-56...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH2_MOUSE
96-598
4
A:96-569
B:96-569
C:96-569
D:96-569
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_An_peroxidase_3ln1D01 (D:204-568)
1b: PFAM_An_peroxidase_3ln1D02 (D:204-568)
1c: PFAM_An_peroxidase_3ln1D03 (D:204-568)
1d: PFAM_An_peroxidase_3ln1D04 (D:204-568)
1e: PFAM_An_peroxidase_3ln1D05 (D:204-568)
1f: PFAM_An_peroxidase_3ln1D06 (D:204-568)
1g: PFAM_An_peroxidase_3ln1D07 (D:204-568)
1h: PFAM_An_peroxidase_3ln1D08 (D:204-568)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: An_peroxidase]
(45)
Family
:
An_peroxidase
(45)
Mus musculus (Mouse)
(11)
1a
An_peroxidase-3ln1D01
D:204-568
1b
An_peroxidase-3ln1D02
D:204-568
1c
An_peroxidase-3ln1D03
D:204-568
1d
An_peroxidase-3ln1D04
D:204-568
1e
An_peroxidase-3ln1D05
D:204-568
1f
An_peroxidase-3ln1D06
D:204-568
1g
An_peroxidase-3ln1D07
D:204-568
1h
An_peroxidase-3ln1D08
D:204-568
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