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3LN0
Biol. Unit 1
Info
Asym.Unit (401 KB)
Biol.Unit 1 (198 KB)
Biol.Unit 2 (199 KB)
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(1)
Title
:
STRUCTURE OF COMPOUND 5C-S BOUND AT THE ACTIVE SITE OF COX-2
Authors
:
J. R. Kiefer, R. G. Kurumbail, W. C. Stallings, J. L. Pawlitz
Date
:
01 Feb 10 (Deposition) - 27 Oct 10 (Release) - 01 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Cox2, Cox-2, Pgh2S-2, Cyclooxygenase-2, Dioxygenase, Disulfide Bond, Endoplasmic Reticulum, Fatty Acid Biosynthesis, Glycoprotein, Heme, Iron, Lipid Synthesis, Membrane, Metal-Binding, Microsome, Oxidoreductase, Peroxidase, Phosphoprotein, Prostaglandin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. L. Wang, D. Limburg, M. J. Graneto, J. Springer, J. R. Hamper, S. Liao J. L. Pawlitz, R. G. Kurumbail, T. Maziasz, J. J. Talley, J. R. Kiefer, J. Carter
The Novel Benzopyran Class Of Selective Cyclooxygenase-2 Inhibitors. Part 2: The Second Clinical Candidate Having A Shorter And Favorable Human Half-Life.
Bioorg. Med. Chem. Lett. V. 20 7159 2010
[
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: (2S)-6,8-DICHLORO-2-(TRIFLUOROMETH... (52Ba)
1b: (2S)-6,8-DICHLORO-2-(TRIFLUOROMETH... (52Bb)
1c: (2S)-6,8-DICHLORO-2-(TRIFLUOROMETH... (52Bc)
1d: (2S)-6,8-DICHLORO-2-(TRIFLUOROMETH... (52Bd)
2a: B-OCTYLGLUCOSIDE (BOGa)
2b: B-OCTYLGLUCOSIDE (BOGb)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
52B
2
Ligand/Ion
(2S)-6,8-DICHLORO-2-(TRIFLUOROMETHYL)-2H-CHROMENE-3-CARBOXYLIC ACID
2
BOG
1
Ligand/Ion
B-OCTYLGLUCOSIDE
3
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:134 , ALA A:185 , PHE A:186 , GLN A:189 , HIS A:193 , PHE A:196 , LYS A:197 , THR A:198 , HIS A:200 , VAL A:281 , ASN A:368 , TYR A:371 , HIS A:372 , HIS A:374 , LEU A:377 , VAL A:433 , HOH A:4121
BINDING SITE FOR RESIDUE HEM A 605
02
AC2
SOFTWARE
SER A:23 , TYR A:40 , GLU A:52 , ASN A:53
BINDING SITE FOR RESIDUE NAG A 661
03
AC3
SOFTWARE
GLU A:126 , ASN A:130 , TYR A:133 , ARG A:202 , NAG A:672 , HOH A:4017 , HOH A:4298 , HOH A:5003
BINDING SITE FOR RESIDUE NAG A 671
04
AC4
SOFTWARE
ARG A:202 , NAG A:671 , NAG A:673 , ASP B:225
BINDING SITE FOR RESIDUE NAG A 672
05
AC5
SOFTWARE
NAG A:672
BINDING SITE FOR RESIDUE NAG A 673
06
AC6
SOFTWARE
GLN A:392 , ASN A:396 , ILE A:399
BINDING SITE FOR RESIDUE NAG A 681
07
AC7
SOFTWARE
VAL A:335 , SER A:339 , TYR A:341 , TYR A:371 , TRP A:373 , PHE A:504 , VAL A:509 , GLY A:512 , ALA A:513 , SER A:516 , HOH A:4099
BINDING SITE FOR RESIDUE 52B A 701
08
AC8
SOFTWARE
GLU A:165 , ARG A:171 , ILE A:428 , GLN A:431 , ARG B:170 , ARG B:171 , ARG B:424 , GLU B:472 , GLU B:476
BINDING SITE FOR RESIDUE BOG A 703
09
AC9
SOFTWARE
TYR B:134 , ALA B:185 , PHE B:186 , ALA B:188 , GLN B:189 , HIS B:193 , PHE B:196 , LYS B:197 , THR B:198 , HIS B:200 , VAL B:281 , ASN B:368 , TYR B:371 , HIS B:372 , HIS B:374 , LEU B:377 , VAL B:433 , ALA B:436 , HOH B:4456
BINDING SITE FOR RESIDUE HEM B 605
10
BC1
SOFTWARE
SER B:23 , TYR B:40 , GLU B:52 , ASN B:53 , HOH B:4422
BINDING SITE FOR RESIDUE NAG B 661
11
BC2
SOFTWARE
GLU B:126 , ASN B:130 , TYR B:133 , ARG B:202 , NAG B:672 , HOH B:4045 , HOH B:4370 , HOH B:4889
BINDING SITE FOR RESIDUE NAG B 671
12
BC3
SOFTWARE
ASP A:225 , ARG B:202 , NAG B:671 , NAG B:673 , HOH B:4882
BINDING SITE FOR RESIDUE NAG B 672
13
BC4
SOFTWARE
NAG B:672
BINDING SITE FOR RESIDUE NAG B 673
14
BC5
SOFTWARE
TYR B:388 , GLN B:392 , ASN B:396 , ILE B:399
BINDING SITE FOR RESIDUE NAG B 681
15
BC6
SOFTWARE
ARG B:106 , VAL B:335 , SER B:339 , TYR B:341 , TYR B:371 , TRP B:373 , PHE B:504 , VAL B:509 , GLY B:512 , ALA B:513 , SER B:516 , HOH B:4699
BINDING SITE FOR RESIDUE 52B B 701
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (A:96-569,B:96-569)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH2_MOUSE
96-598
2
A:96-569
B:96-569
-
-
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_An_peroxidase_3ln0D01 (D:204-568)
1b: PFAM_An_peroxidase_3ln0D02 (D:204-568)
1c: PFAM_An_peroxidase_3ln0D03 (D:204-568)
1d: PFAM_An_peroxidase_3ln0D04 (D:204-568)
1e: PFAM_An_peroxidase_3ln0D05 (D:204-568)
1f: PFAM_An_peroxidase_3ln0D06 (D:204-568)
1g: PFAM_An_peroxidase_3ln0D07 (D:204-568)
1h: PFAM_An_peroxidase_3ln0D08 (D:204-568)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: An_peroxidase]
(45)
Family
:
An_peroxidase
(45)
Mus musculus (Mouse)
(11)
1a
An_peroxidase-3ln0D01
D:204-568
1b
An_peroxidase-3ln0D02
D:204-568
1c
An_peroxidase-3ln0D03
D:204-568
1d
An_peroxidase-3ln0D04
D:204-568
1e
An_peroxidase-3ln0D05
D:204-568
1f
An_peroxidase-3ln0D06
D:204-568
1g
An_peroxidase-3ln0D07
D:204-568
1h
An_peroxidase-3ln0D08
D:204-568
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Asym.Unit (401 KB)
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Biol.Unit 1 (198 KB)
Header - Biol.Unit 1
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