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3LMT
Biol. Unit 3
Info
Asym.Unit (161 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (54 KB)
Biol.Unit 3 (52 KB)
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(1)
Title
:
CRYSTAL STRUCUTRE OF DTD FROM PLASMODIUM FALCIPARUM
Authors
:
Y. Manickam, T. K. Bhatt, S. Khan, A. Sharma
Date
:
01 Feb 10 (Deposition) - 02 Mar 10 (Release) - 27 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Dtd, Deacylase, Hydrolase, Iodide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Yogavel, S. Khan, T. K. Bhatt, A. Sharma
Structure Of D-Tyrosyl-Trnatyr Deacylase Using Home-Source Cu Kalpha And Moderate-Quality Iodide-Sad Data: Structural Polymorphism And Hepes-Bound Enzyme States
Acta Crystallogr. , Sect. D V. 66 584 2010
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Hetero Components
(1, 11)
Info
All Hetero Components
1a: IODIDE ION (IODa)
1aa: IODIDE ION (IODaa)
1ab: IODIDE ION (IODab)
1ac: IODIDE ION (IODac)
1b: IODIDE ION (IODb)
1c: IODIDE ION (IODc)
1d: IODIDE ION (IODd)
1e: IODIDE ION (IODe)
1f: IODIDE ION (IODf)
1g: IODIDE ION (IODg)
1h: IODIDE ION (IODh)
1i: IODIDE ION (IODi)
1j: IODIDE ION (IODj)
1k: IODIDE ION (IODk)
1l: IODIDE ION (IODl)
1m: IODIDE ION (IODm)
1n: IODIDE ION (IODn)
1o: IODIDE ION (IODo)
1p: IODIDE ION (IODp)
1q: IODIDE ION (IODq)
1r: IODIDE ION (IODr)
1s: IODIDE ION (IODs)
1t: IODIDE ION (IODt)
1u: IODIDE ION (IODu)
1v: IODIDE ION (IODv)
1w: IODIDE ION (IODw)
1x: IODIDE ION (IODx)
1y: IODIDE ION (IODy)
1z: IODIDE ION (IODz)
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No.
Name
Count
Type
Full Name
1
IOD
11
Ligand/Ion
IODIDE ION
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Sites
(10, 10)
Info
All Sites
01: BC9 (SOFTWARE)
02: CC1 (SOFTWARE)
03: CC2 (SOFTWARE)
04: CC3 (SOFTWARE)
05: CC4 (SOFTWARE)
06: CC5 (SOFTWARE)
07: CC6 (SOFTWARE)
08: CC7 (SOFTWARE)
09: CC8 (SOFTWARE)
10: CC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
BC9
SOFTWARE
GLN E:6 , ASN E:147 , ASN F:147
BINDING SITE FOR RESIDUE IOD E 165
02
CC1
SOFTWARE
SER E:87 , TYR E:116 , GLY E:135 , PHE E:137
BINDING SITE FOR RESIDUE IOD E 166
03
CC2
SOFTWARE
ASN E:61 , ASN F:99
BINDING SITE FOR RESIDUE IOD E 167
04
CC3
SOFTWARE
ARG E:2 , ASN E:94 , LEU E:105
BINDING SITE FOR RESIDUE IOD E 168
05
CC4
SOFTWARE
ILE E:43 , SER E:87
BINDING SITE FOR RESIDUE IOD E 169
06
CC5
SOFTWARE
ASN A:99 , ASN E:80 , ASN E:128
BINDING SITE FOR RESIDUE IOD E 170
07
CC6
SOFTWARE
TYR F:116 , GLY F:135 , PHE F:137
BINDING SITE FOR RESIDUE IOD F 165
08
CC7
SOFTWARE
ARG F:2
BINDING SITE FOR RESIDUE IOD F 167
09
CC8
SOFTWARE
ARG F:57
BINDING SITE FOR RESIDUE IOD F 168
10
CC9
SOFTWARE
ILE F:43
BINDING SITE FOR RESIDUE IOD F 169
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3lmta_ (A:)
1b: SCOP_d3lmtb_ (B:)
1c: SCOP_d3lmtc_ (C:)
1d: SCOP_d3lmtd_ (D:)
1e: SCOP_d3lmte_ (E:)
1f: SCOP_d3lmtf_ (F:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DTD-like
(18)
Superfamily
:
DTD-like
(18)
Family
:
automated matches
(15)
Protein domain
:
automated matches
(15)
Plasmodium falciparum [TaxId: 36329]
(13)
1a
d3lmta_
A:
1b
d3lmtb_
B:
1c
d3lmtc_
C:
1d
d3lmtd_
D:
1e
d3lmte_
E:
1f
d3lmtf_
F:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Tyr_Deacylase_3lmtF01 (F:2-157)
1b: PFAM_Tyr_Deacylase_3lmtF02 (F:2-157)
1c: PFAM_Tyr_Deacylase_3lmtF03 (F:2-157)
1d: PFAM_Tyr_Deacylase_3lmtF04 (F:2-157)
1e: PFAM_Tyr_Deacylase_3lmtF05 (F:2-157)
1f: PFAM_Tyr_Deacylase_3lmtF06 (F:2-157)
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Clans
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Organisms
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Clan
:
no clan defined [family: Tyr_Deacylase]
(12)
Family
:
Tyr_Deacylase
(12)
Plasmodium falciparum (isolate 3D7)
(9)
1a
Tyr_Deacylase-3lmtF01
F:2-157
1b
Tyr_Deacylase-3lmtF02
F:2-157
1c
Tyr_Deacylase-3lmtF03
F:2-157
1d
Tyr_Deacylase-3lmtF04
F:2-157
1e
Tyr_Deacylase-3lmtF05
F:2-157
1f
Tyr_Deacylase-3lmtF06
F:2-157
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Asymmetric Unit 1
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Asym.Unit (161 KB)
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Biol.Unit 1 (56 KB)
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Biol.Unit 2 (54 KB)
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Biol.Unit 3 (52 KB)
Header - Biol.Unit 3
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