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3LK4
Asym. Unit
Info
Asym.Unit (2.2 MB)
Biol.Unit 1 (198 KB)
Biol.Unit 10 (196 KB)
Biol.Unit 11 (196 KB)
Biol.Unit 12 (197 KB)
Biol.Unit 2 (197 KB)
Biol.Unit 3 (197 KB)
Biol.Unit 4 (197 KB)
Biol.Unit 5 (196 KB)
Biol.Unit 6 (197 KB)
Biol.Unit 7 (195 KB)
Biol.Unit 8 (196 KB)
Biol.Unit 9 (198 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CAPZ BOUND TO THE UNCAPPING MOTIF FROM CD2AP
Authors
:
M. Hernandez-Valladares, T. Kim, B. Kannan, A. Tung, J. A. Cooper, R. C. Robinson
Date
:
27 Jan 10 (Deposition) - 07 Apr 10 (Release) - 07 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.99
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,0,1,2,3,4,5,6,7,8,9
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Biol. Unit 5: M,N,O (1x)
Biol. Unit 6: P,Q,R (1x)
Biol. Unit 7: S,T,U (1x)
Biol. Unit 8: V,W,X (1x)
Biol. Unit 9: Y,Z,0 (1x)
Biol. Unit 10: 1,2,3 (1x)
Biol. Unit 11: 4,5,6 (1x)
Biol. Unit 12: 7,8,9 (1x)
Keywords
:
Capz, Cd2Ap, Actin Filaments, Uncapping, Actin-Filament Regulators, Protein-Protein Comple, Actin Capping, Actin- Binding, Cytoplasm, Cytoskeleton, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Hernandez-Valladares, T. Kim, B. Kannan, A. Tung, A. H. Aguda, M. Larrson, J. A. Cooper, R. C. Robinson
Structural Characterization Of A Capping Protein Interaction Motif Defines A Family Of Actin Filament Regulators
Nat. Struct. Mol. Biol. 2010
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(1, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_CAZA1_CHICK_001 (F163I, chain 1/4/7/A/D/G/J/M/P/S/V/Y, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CAZA1_CHICK_001
*
F
163
I
CAZA1_CHICK
---
---
1/4/7/A/D/G/J/M/P/S/V/Y
F
163
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(3, 36)
Info
All PROSITE Patterns/Profiles
1: F_ACTIN_CAPPING_BETA (2:62-67,5:62-67,8:62-67,B:62-67,E:...)
2: F_ACTIN_CAPPING_A_1 (1:196-204,4:196-204,7:196-204,A:19...)
3: F_ACTIN_CAPPING_A_2 (1:256-266,4:256-266,7:256-266,A:25...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
F_ACTIN_CAPPING_BETA
PS00231
F-actin capping protein beta subunit signature.
CAPZB_CHICK
62-67
12
2:62-67
5:62-67
8:62-67
B:62-67
E:62-67
H:62-67
K:62-67
N:62-67
Q:62-67
T:62-67
W:62-67
Z:62-67
2
F_ACTIN_CAPPING_A_1
PS00748
F-actin capping protein alpha subunit signature 1.
CAZA1_CHICK
196-204
12
1:196-204
4:196-204
7:196-204
A:196-204
D:196-204
G:196-204
J:196-204
M:196-204
P:196-204
S:196-204
V:196-204
Y:196-204
3
F_ACTIN_CAPPING_A_2
PS00749
F-actin capping protein alpha subunit signature 2.
CAZA1_CHICK
256-266
12
1:256-266
4:256-266
7:256-266
A:256-266
D:256-266
G:256-266
J:256-266
M:256-266
P:256-266
S:256-266
V:256-266
Y:256-266
[
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]
Exons
(9, 108)
Info
All Exons
Exon 1.2a (2:3-30 | 5:4-30 | 8:2-30 | B:3-30 ...)
Exon 1.3 (2:31-71 | 5:31-71 | 8:31-71 | B:31...)
Exon 1.4 (2:71-109 | 5:71-109 | 8:71-109 | B...)
Exon 1.5 (2:109-156 | 5:109-156 | 8:109-156 ...)
Exon 1.6 (2:157-195 (gaps) | 5:157-195 (gaps...)
Exon 1.7 (2:196-217 | 5:196-217 | 8:196-217 ...)
Exon 1.8 (2:218-243 | 5:218-243 | 8:218-243 ...)
Exon 1.9 (2:243-244 | 5:243-244 | 8:243-244 ...)
Exon 2.14 (0:475-503 | 3:475-503 | 6:475-503 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.2a
02: Boundary 1.2a/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10a
10: Boundary 2.13/2.14
11: Boundary 2.14/2.15b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENSGALT00000006425
2a
ENSGALE00000042043
chr21:
4747591-4747501
91
CAPZB_CHICK
1-30
30
12
2:3-30
5:4-30
8:2-30
B:3-30
E:3-30
H:2-30
K:3-30
N:2-30
Q:3-30
T:4-30
W:2-30
Z:2-30
28
27
29
28
28
29
28
29
28
27
29
29
1.3
ENSGALT00000006425
3
ENSGALE00000042051
chr21:
4734482-4734361
122
CAPZB_CHICK
31-71
41
12
2:31-71
5:31-71
8:31-71
B:31-71
E:31-71
H:31-71
K:31-71
N:31-71
Q:31-71
T:31-71
W:31-71
Z:31-71
41
41
41
41
41
41
41
41
41
41
41
41
1.4
ENSGALT00000006425
4
ENSGALE00000042045
chr21:
4723866-4723753
114
CAPZB_CHICK
71-109
39
12
2:71-109
5:71-109
8:71-109
B:71-109
E:71-109
H:71-109
K:71-109
N:71-109
Q:71-109
T:71-109
W:71-109
Z:71-109
39
39
39
39
39
39
39
39
39
39
39
39
1.5
ENSGALT00000006425
5
ENSGALE00000042044
chr21:
4709816-4709675
142
CAPZB_CHICK
109-156
48
12
2:109-156
5:109-156
8:109-156
B:109-156
E:109-156
H:109-156
K:109-156
N:109-156
Q:109-156
T:109-156
W:109-156
Z:109-156
48
48
48
48
48
48
48
48
48
48
48
48
1.6
ENSGALT00000006425
6
ENSGALE00000042049
chr21:
4709146-4709030
117
CAPZB_CHICK
157-195
39
12
2:157-195 (gaps)
5:157-195 (gaps)
8:157-195 (gaps)
B:157-195 (gaps)
E:157-195 (gaps)
H:157-195 (gaps)
K:157-195 (gaps)
N:157-195 (gaps)
Q:157-195 (gaps)
T:157-195 (gaps)
W:157-195 (gaps)
Z:157-195 (gaps)
39
39
39
39
39
39
39
39
39
39
39
39
1.7
ENSGALT00000006425
7
ENSGALE00000042042
chr21:
4702101-4702036
66
CAPZB_CHICK
196-217
22
12
2:196-217
5:196-217
8:196-217
B:196-217
E:196-217
H:196-217
K:196-217
N:196-217
Q:196-217
T:196-217
W:196-217
Z:196-217
22
22
22
22
22
22
22
22
22
22
22
22
1.8
ENSGALT00000006425
8
ENSGALE00000042048
chr21:
4701227-4701151
77
CAPZB_CHICK
218-243
26
12
2:218-243
5:218-243
8:218-243
B:218-243
E:218-243
H:218-243
K:218-243
N:218-243
Q:218-243
T:218-243
W:218-243
Z:218-243
26
26
26
26
26
26
26
26
26
26
26
26
1.9
ENSGALT00000006425
9
ENSGALE00000042047
chr21:
4699862-4699750
113
CAPZB_CHICK
243-276
34
12
2:243-244
5:243-244
8:243-244
B:243-244
E:243-244
H:243-244
K:243-244
N:243-244
Q:243-244
T:243-244
W:243-244
Z:243-244
2
2
2
2
2
2
2
2
2
2
2
2
1.10a
ENSGALT00000006425
10a
ENSGALE00000042050
chr21:
4697971-4697725
247
CAPZB_CHICK
-
0
0
-
-
2.1
ENST00000359314
1
ENSE00001516297
chr6:
47445525-47445984
460
CD2AP_HUMAN
1-2
2
0
-
-
2.2
ENST00000359314
2
ENSE00000755720
chr6:
47471016-47471176
161
CD2AP_HUMAN
2-55
54
0
-
-
2.3a
ENST00000359314
3a
ENSE00000619362
chr6:
47501338-47501491
154
CD2AP_HUMAN
56-107
52
0
-
-
2.4a
ENST00000359314
4a
ENSE00001139103
chr6:
47512342-47512442
101
CD2AP_HUMAN
107-140
34
0
-
-
2.5
ENST00000359314
5
ENSE00001139093
chr6:
47522382-47522502
121
CD2AP_HUMAN
141-181
41
0
-
-
2.6
ENST00000359314
6
ENSE00001139085
chr6:
47541800-47541987
188
CD2AP_HUMAN
181-243
63
0
-
-
2.7b
ENST00000359314
7b
ENSE00001139077
chr6:
47544260-47544338
79
CD2AP_HUMAN
244-270
27
0
-
-
2.8
ENST00000359314
8
ENSE00002190760
chr6:
47544745-47544839
95
CD2AP_HUMAN
270-301
32
0
-
-
2.9a
ENST00000359314
9a
ENSE00001139061
chr6:
47547121-47547225
105
CD2AP_HUMAN
302-336
35
0
-
-
2.10
ENST00000359314
10
ENSE00002145560
chr6:
47548600-47548636
37
CD2AP_HUMAN
337-349
13
0
-
-
2.11a
ENST00000359314
11a
ENSE00001139049
chr6:
47549739-47549801
63
CD2AP_HUMAN
349-370
22
0
-
-
2.12
ENST00000359314
12
ENSE00001139043
chr6:
47563597-47563762
166
CD2AP_HUMAN
370-425
56
0
-
-
2.13
ENST00000359314
13
ENSE00001139036
chr6:
47567037-47567179
143
CD2AP_HUMAN
425-473
49
0
-
-
2.14
ENST00000359314
14
ENSE00001139029
chr6:
47573901-47574013
113
CD2AP_HUMAN
473-510
38
12
0:475-503
3:475-503
6:475-503
9:475-503
C:475-503
F:475-503
I:475-503
L:475-503
O:475-503
R:475-503
U:475-503
X:475-503
29
29
29
29
29
29
29
29
29
29
29
29
2.15b
ENST00000359314
15b
ENSE00001139023
chr6:
47575663-47575764
102
CD2AP_HUMAN
511-544
34
0
-
-
2.16a
ENST00000359314
16a
ENSE00001139019
chr6:
47576859-47577040
182
CD2AP_HUMAN
545-605
61
0
-
-
2.17
ENST00000359314
17
ENSE00001176400
chr6:
47580209-47580272
64
CD2AP_HUMAN
605-626
22
0
-
-
2.18
ENST00000359314
18
ENSE00001454693
chr6:
47591922-47594999
3078
CD2AP_HUMAN
627-639
13
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(2, 24)
Info
all PFAM domains
1a: PFAM_F_actin_cap_A_3lk4Y01 (Y:12-276)
1b: PFAM_F_actin_cap_A_3lk4Y02 (Y:12-276)
1c: PFAM_F_actin_cap_A_3lk4Y03 (Y:12-276)
1d: PFAM_F_actin_cap_A_3lk4Y04 (Y:12-276)
1e: PFAM_F_actin_cap_A_3lk4Y05 (Y:12-276)
1f: PFAM_F_actin_cap_A_3lk4Y06 (Y:12-276)
1g: PFAM_F_actin_cap_A_3lk4Y07 (Y:12-276)
1h: PFAM_F_actin_cap_A_3lk4Y08 (Y:12-276)
1i: PFAM_F_actin_cap_A_3lk4Y09 (Y:12-276)
1j: PFAM_F_actin_cap_A_3lk4Y10 (Y:12-276)
1k: PFAM_F_actin_cap_A_3lk4Y11 (Y:12-276)
1l: PFAM_F_actin_cap_A_3lk4Y12 (Y:12-276)
2a: PFAM_F_actin_cap_B_3lk4Z01 (Z:5-240)
2b: PFAM_F_actin_cap_B_3lk4Z02 (Z:5-240)
2c: PFAM_F_actin_cap_B_3lk4Z03 (Z:5-240)
2d: PFAM_F_actin_cap_B_3lk4Z04 (Z:5-240)
2e: PFAM_F_actin_cap_B_3lk4Z05 (Z:5-240)
2f: PFAM_F_actin_cap_B_3lk4Z06 (Z:5-240)
2g: PFAM_F_actin_cap_B_3lk4Z07 (Z:5-240)
2h: PFAM_F_actin_cap_B_3lk4Z08 (Z:5-240)
2i: PFAM_F_actin_cap_B_3lk4Z09 (Z:5-240)
2j: PFAM_F_actin_cap_B_3lk4Z10 (Z:5-240)
2k: PFAM_F_actin_cap_B_3lk4Z11 (Z:5-240)
2l: PFAM_F_actin_cap_B_3lk4Z12 (Z:5-240)
View:
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(
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(
)
Clan
:
no clan defined [family: F-actin_cap_A]
(8)
Family
:
F-actin_cap_A
(8)
Gallus gallus (Chicken)
(5)
1a
F-actin_cap_A-3lk4Y01
Y:12-276
1b
F-actin_cap_A-3lk4Y02
Y:12-276
1c
F-actin_cap_A-3lk4Y03
Y:12-276
1d
F-actin_cap_A-3lk4Y04
Y:12-276
1e
F-actin_cap_A-3lk4Y05
Y:12-276
1f
F-actin_cap_A-3lk4Y06
Y:12-276
1g
F-actin_cap_A-3lk4Y07
Y:12-276
1h
F-actin_cap_A-3lk4Y08
Y:12-276
1i
F-actin_cap_A-3lk4Y09
Y:12-276
1j
F-actin_cap_A-3lk4Y10
Y:12-276
1k
F-actin_cap_A-3lk4Y11
Y:12-276
1l
F-actin_cap_A-3lk4Y12
Y:12-276
Clan
:
no clan defined [family: F_actin_cap_B]
(5)
Family
:
F_actin_cap_B
(5)
Gallus gallus (Chicken)
(5)
2a
F_actin_cap_B-3lk4Z01
Z:5-240
2b
F_actin_cap_B-3lk4Z02
Z:5-240
2c
F_actin_cap_B-3lk4Z03
Z:5-240
2d
F_actin_cap_B-3lk4Z04
Z:5-240
2e
F_actin_cap_B-3lk4Z05
Z:5-240
2f
F_actin_cap_B-3lk4Z06
Z:5-240
2g
F_actin_cap_B-3lk4Z07
Z:5-240
2h
F_actin_cap_B-3lk4Z08
Z:5-240
2i
F_actin_cap_B-3lk4Z09
Z:5-240
2j
F_actin_cap_B-3lk4Z10
Z:5-240
2k
F_actin_cap_B-3lk4Z11
Z:5-240
2l
F_actin_cap_B-3lk4Z12
Z:5-240
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Asym.Unit (2.2 MB)
Header - Asym.Unit
Biol.Unit 1 (198 KB)
Header - Biol.Unit 1
Biol.Unit 10 (196 KB)
Header - Biol.Unit 10
Biol.Unit 11 (196 KB)
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Biol.Unit 12 (197 KB)
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