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3LJF
Asym. Unit
Info
Asym.Unit (140 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (68 KB)
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(1)
Title
:
THE X-RAY STRUCTURE OF IRON SUPEROXIDE DISMUTASE FROM PSEUDOALTEROMONAS HALOPLANKTIS (CRYSTAL FORM II)
Authors
:
A. Merlino, I. Russo Krauss, B. Rossi, M. Conte, A. Vergara, F. Sica
Date
:
26 Jan 10 (Deposition) - 08 Sep 10 (Release) - 24 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Cold Adaptation, Superoxide Dismutase, Flexibility, Thermal Stability, Psychrophilic Protein, Metal-Binding, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Merlino, I. Russo Krauss, I. Castellano, E. De Vendittis, B. Rossi, M. Conte, A. Vergara, F. Sica
Structure And Flexibility In Cold-Adapted Iron Superoxide Dismutases: The Case Of The Enzyme Isolated From Pseudoalteromonas Haloplanktis.
J. Struct. Biol. V. 172 343 2010
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
2a: TREHALOSE (TREa)
2b: TREHALOSE (TREb)
2c: TREHALOSE (TREc)
2d: TREHALOSE (TREd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FE
4
Ligand/Ion
FE (III) ION
2
TRE
4
Ligand/Ion
TREHALOSE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:26 , HIS A:73 , ASP A:157 , HIS A:161 , HOH A:5004
BINDING SITE FOR RESIDUE FE A 5000
2
AC2
SOFTWARE
ASN A:116 , ASN A:117 , PHE A:118 , ASN A:137 , SER A:139 , HOH A:5130 , HOH A:5179 , HOH A:5340 , HOH A:5376 , GLY B:61 , GLY B:62 , HOH B:5366
BINDING SITE FOR RESIDUE TRE A 193
3
AC3
SOFTWARE
HIS C:26 , HIS C:73 , ASP C:157 , HIS C:161 , HOH C:5006
BINDING SITE FOR RESIDUE FE C 5002
4
AC4
SOFTWARE
ASN C:116 , ASN C:117 , PHE C:118 , ASN C:137 , SER C:139 , HOH C:1720 , HOH C:1727 , HOH C:5191 , GLY D:61 , GLY D:62
BINDING SITE FOR RESIDUE TRE C 195
5
AC5
SOFTWARE
HIS B:26 , HIS B:73 , ASP B:157 , HIS B:161 , HOH B:5005
BINDING SITE FOR RESIDUE FE B 5001
6
AC6
SOFTWARE
GLY A:61 , GLY A:62 , LYS B:113 , ASN B:116 , ASN B:117 , PHE B:118 , ASN B:137 , HOH B:1736 , HOH B:5180 , HOH B:5252 , HOH B:5269 , HOH B:5337 , HOH B:5379
BINDING SITE FOR RESIDUE TRE B 194
7
AC7
SOFTWARE
HIS D:26 , HIS D:73 , ASP D:157 , HIS D:161 , HOH D:1699
BINDING SITE FOR RESIDUE FE D 5003
8
AC8
SOFTWARE
GLY C:61 , GLY C:62 , ASN C:65 , LYS D:113 , ASN D:116 , ASN D:117 , PHE D:118 , ASN D:137 , HOH D:1723 , HOH D:1745 , HOH D:5314 , HOH D:5394 , HOH D:5408 , HOH D:5414
BINDING SITE FOR RESIDUE TRE D 196
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SOD_MN (A:157-164,B:157-164,C:157-164,D:15...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SOD_MN
PS00088
Manganese and iron superoxide dismutases signature.
SODF_PSEHT
157-164
4
A:157-164
B:157-164
C:157-164
D:157-164
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3ljfa1 (A:1-82)
1b: SCOP_d3ljfb1 (B:1-82)
1c: SCOP_d3ljfc1 (C:1-82)
1d: SCOP_d3ljfd1 (D:1-82)
2a: SCOP_d3ljfa2 (A:83-192)
2b: SCOP_d3ljfb2 (B:83-192)
2c: SCOP_d3ljfc2 (C:83-192)
2d: SCOP_d3ljfd2 (D:83-192)
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Classes
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)
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Folds
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Long alpha-hairpin
(315)
Superfamily
:
Fe,Mn superoxide dismutase (SOD), N-terminal domain
(122)
Family
:
automated matches
(42)
Protein domain
:
automated matches
(42)
Pseudoalteromonas haloplanktis [TaxId: 326442]
(4)
1a
d3ljfa1
A:1-82
1b
d3ljfb1
B:1-82
1c
d3ljfc1
C:1-82
1d
d3ljfd1
D:1-82
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Fe,Mn superoxide dismutase (SOD), C-terminal domain
(122)
Superfamily
:
Fe,Mn superoxide dismutase (SOD), C-terminal domain
(122)
Family
:
automated matches
(40)
Protein domain
:
automated matches
(40)
Pseudoalteromonas haloplanktis [TaxId: 326442]
(4)
2a
d3ljfa2
A:83-192
2b
d3ljfb2
B:83-192
2c
d3ljfc2
C:83-192
2d
d3ljfd2
D:83-192
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Sod_Fe_C_3ljfD01 (D:86-191)
1b: PFAM_Sod_Fe_C_3ljfD02 (D:86-191)
1c: PFAM_Sod_Fe_C_3ljfD03 (D:86-191)
1d: PFAM_Sod_Fe_C_3ljfD04 (D:86-191)
2a: PFAM_Sod_Fe_N_3ljfD05 (D:1-81)
2b: PFAM_Sod_Fe_N_3ljfD06 (D:1-81)
2c: PFAM_Sod_Fe_N_3ljfD07 (D:1-81)
2d: PFAM_Sod_Fe_N_3ljfD08 (D:1-81)
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Clans
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)
Organisms
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)
(
)
Clan
:
no clan defined [family: Sod_Fe_C]
(46)
Family
:
Sod_Fe_C
(46)
Pseudoalteromonas haloplanktis (strain TAC 125)
(3)
1a
Sod_Fe_C-3ljfD01
D:86-191
1b
Sod_Fe_C-3ljfD02
D:86-191
1c
Sod_Fe_C-3ljfD03
D:86-191
1d
Sod_Fe_C-3ljfD04
D:86-191
Clan
:
no clan defined [family: Sod_Fe_N]
(46)
Family
:
Sod_Fe_N
(46)
Pseudoalteromonas haloplanktis (strain TAC 125)
(3)
2a
Sod_Fe_N-3ljfD05
D:1-81
2b
Sod_Fe_N-3ljfD06
D:1-81
2c
Sod_Fe_N-3ljfD07
D:1-81
2d
Sod_Fe_N-3ljfD08
D:1-81
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