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Asym. Unit
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Asym.Unit (150 KB)
Biol.Unit 1 (141 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BLA G 2 COMPLEXED WITH FAB 4C3
Authors
:
M. Li, A. Gustchina, J. Glesner, S. Wunschmann, A. Pomes, A. Wlodawer
Date
:
25 Jan 10 (Deposition) - 15 Dec 10 (Release) - 26 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,H,L
Biol. Unit 1: A,H,L (1x)
Keywords
:
Hydrolase-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Glesner, S. Wunschmann, M. Li, A. Gustchina, A. Wlodawer, M. Himly, M. D. Chapman, A. Pomes
Mechanisms Of Allergen-Antibody Interaction Of Cockroach Allergen Bla G 2 With Monoclonal Antibodies That Inhibit Ig Antibody Binding.
Plos One V. 6 22223 2011
[
close entry info
]
Hetero Components
(6, 21)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
4a: ALPHA-D-MANNOSE (MANa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
CD
3
Ligand/Ion
CADMIUM ION
3
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
4
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
ZN
7
Ligand/Ion
ZINC ION
[
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]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:268 , ILE A:269 , SER A:270 , TYR A:273 , HIS A:308 , ARG A:324 , HOH A:361 , HOH A:414 , NAG A:502 , HOH A:813 , ASN H:74
BINDING SITE FOR RESIDUE NAG A 501
02
AC2
SOFTWARE
ARG A:324 , NAG A:501 , BMA A:503 , MAN A:504 , HOH A:534 , HOH A:600 , HOH A:813 , ASN H:54 , ALA H:56 , HOH H:420
BINDING SITE FOR RESIDUE NAG A 502
03
AC3
SOFTWARE
NAG A:502 , MAN A:504 , ALA H:56
BINDING SITE FOR RESIDUE BMA A 503
04
AC4
SOFTWARE
NAG A:502 , BMA A:503 , HOH A:534
BINDING SITE FOR RESIDUE MAN A 504
05
AC5
SOFTWARE
VAL A:150 , ASN A:314 , GLU A:316 , ASN A:317 , HOH A:498 , HOH A:537 , HOH A:612 , HOH A:666
BINDING SITE FOR RESIDUE NAG A 601
06
AC6
SOFTWARE
HIS A:308 , GLU A:327 , HOH A:347 , HOH A:361 , HOH A:447
BINDING SITE FOR RESIDUE CD A 330
07
AC7
SOFTWARE
HIS A:3 , HOH A:345 , HOH A:448 , HOH A:449 , GLU L:79
BINDING SITE FOR RESIDUE CD A 331
08
AC8
SOFTWARE
GLU A:138 , GLU A:142 , GLU L:185 , HIS L:189 , HOH L:346
BINDING SITE FOR RESIDUE CD A 332
09
AC9
SOFTWARE
HIS A:155 , HIS A:161 , ASP A:303 , ASP A:307
BINDING SITE FOR RESIDUE ZN A 333
10
BC1
SOFTWARE
ASP A:248 , SER A:250 , HOH A:443 , HOH A:877 , GLU L:93
BINDING SITE FOR RESIDUE ZN A 334
11
BC2
SOFTWARE
ASP A:100 , HOH A:450 , HOH A:648
BINDING SITE FOR RESIDUE ZN A 335
12
BC3
SOFTWARE
LYS A:191 , ASP A:297 , HIS A:298
BINDING SITE FOR RESIDUE ZN A 336
13
BC4
SOFTWARE
CYS A:289 , HIS A:291 , HOH A:559
BINDING SITE FOR RESIDUE ZN A 337
14
BC5
SOFTWARE
ALA A:226 , TYR A:227 , HOH A:407 , HOH A:549
BINDING SITE FOR RESIDUE EDO A 338
15
BC6
SOFTWARE
ARG A:157 , GLN A:272 , TYR A:273 , ILE A:275 , GLN A:276 , GLN A:277 , HOH A:357 , HOH A:512 , HOH A:561
BINDING SITE FOR RESIDUE EDO A 339
16
BC7
SOFTWARE
ARG A:193 , LEU A:194 , ASP A:195 , ALA A:207 , GLY A:208 , HOH A:466 , HOH A:499 , HOH A:573 , HOH A:581
BINDING SITE FOR RESIDUE EDO A 340
17
BC8
SOFTWARE
PHE A:5 , GLU A:160 , HOH A:492
BINDING SITE FOR RESIDUE EDO A 341
18
BC9
SOFTWARE
TYR A:273 , HOH A:484 , HOH A:566
BINDING SITE FOR RESIDUE EDO A 342
19
CC1
SOFTWARE
PHE A:158 , ASP A:159A , GLU A:160 , HOH A:826
BINDING SITE FOR RESIDUE EDO A 343
20
CC2
SOFTWARE
HOH A:108 , ASP A:248 , LYS A:251 , ASP L:92 , GLU L:93 , HOH L:410 , HOH L:445 , HOH L:446
BINDING SITE FOR RESIDUE ZN L 212
21
CC3
SOFTWARE
HIS H:170 , HOH H:451 , ASN L:138 , HOH L:214
BINDING SITE FOR RESIDUE ZN L 213
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PEPTIDASE_A1 (A:14-323)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEPTIDASE_A1
PS51767
Peptidase family A1 domain profile.
ASP2_BLAGE
39-346
1
A:14-323
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d3liza_ (A:)
2a: SCOP_d3lizl1 (L:1-107)
3a: SCOP_d3lizl2 (L:108-211)
View:
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Classes
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)
(
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Folds
(
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(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
automated matches
(23)
Protein domain
:
automated matches
(23)
Blattella germanica [TaxId: 6973]
(3)
1a
d3liza_
A:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
2a
d3lizl1
L:1-107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Mouse (Mus musculus) [TaxId: 10090]
(309)
3a
d3lizl2
L:108-211
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Asp_3lizA01 (A:13-325)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Peptidase_AA
(368)
Family
:
Asp
(155)
Blattella germanica (German cockroach) (Blatta germanica)
(2)
1a
Asp-3lizA01
A:13-325
[
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]
Atom Selection
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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