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3LHV
Asym. Unit
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Asym.Unit (150 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (74 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MUTANT V182A.I199A.V201A OF OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM COMPLEXED WITH INHIBITOR BMP
Authors
:
A. A. Fedorov, E. V. Fedorov, B. M. Wood, J. A. Gerlt, S. C. Almo
Date
:
23 Jan 10 (Deposition) - 16 Jun 10 (Release) - 16 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Mutant V182A. I199A. V201A, 6-Hydroxyuridine-5'-Phosphate, Decarboxylase, Pyrimidine Biosynthesis, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. M. Wood, T. L. Amyes, A. A. Fedorov, E. V. Fedorov, A. Shabila, S. C. Almo, J. P. Richard, J. A. Gerlt
Conformational Changes In Orotidine 5'-Monophosphate Decarboxylase: "Remote" Residues That Stabilize The Active Conformation.
Biochemistry V. 49 3514 2010
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: 1-(5'-PHOSPHO-BETA-D-RIBOFURANOSYL... (BMQa)
1b: 1-(5'-PHOSPHO-BETA-D-RIBOFURANOSYL... (BMQb)
1c: 1-(5'-PHOSPHO-BETA-D-RIBOFURANOSYL... (BMQc)
1d: 1-(5'-PHOSPHO-BETA-D-RIBOFURANOSYL... (BMQd)
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No.
Name
Count
Type
Full Name
1
BMQ
4
Ligand/Ion
1-(5'-PHOSPHO-BETA-D-RIBOFURANOSYL)BARBITURIC ACID
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Sites
(4, 4)
Info
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:20 , LYS A:42 , ASP A:70 , LYS A:72 , MET A:126 , SER A:127 , PRO A:180 , GLN A:185 , GLY A:202 , ARG A:203 , HOH A:238 , HOH A:240 , HOH A:241 , HOH A:244 , HOH A:245 , HOH A:247 , HOH A:248 , ASP B:75 , ILE B:76 , THR B:79
BINDING SITE FOR RESIDUE BMQ A 229
2
AC2
SOFTWARE
ASP A:75 , ILE A:76 , THR A:79 , ASP B:20 , LYS B:42 , ASP B:70 , LYS B:72 , MET B:126 , SER B:127 , PRO B:180 , GLN B:185 , GLY B:202 , ARG B:203 , HOH B:239 , HOH B:244 , HOH B:246 , HOH B:247 , HOH B:249 , HOH B:251 , HOH B:271
BINDING SITE FOR RESIDUE BMQ B 229
3
AC3
SOFTWARE
ASP C:20 , LYS C:42 , ASP C:70 , LYS C:72 , MET C:126 , SER C:127 , PRO C:180 , GLN C:185 , GLY C:202 , ARG C:203 , HOH C:238 , HOH C:241 , HOH C:242 , HOH C:244 , HOH C:246 , HOH C:248 , HOH C:250 , ASP D:75 , ILE D:76 , THR D:79
BINDING SITE FOR RESIDUE BMQ C 229
4
AC4
SOFTWARE
ASP C:75 , ILE C:76 , THR C:79 , ASP D:20 , LYS D:42 , ASP D:70 , LYS D:72 , MET D:126 , SER D:127 , PRO D:180 , GLN D:185 , GLY D:202 , ARG D:203 , HOH D:236 , HOH D:241 , HOH D:244 , HOH D:248 , HOH D:249 , HOH D:251 , HOH D:285
BINDING SITE FOR RESIDUE BMQ D 229
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: OMPDECASE (A:67-80,B:67-80,C:67-80,D:67-80)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
OMPDECASE
PS00156
Orotidine 5'-phosphate decarboxylase active site.
PYRF_METTH
67-80
4
A:67-80
B:67-80
C:67-80
D:67-80
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3lhva_ (A:)
1b: SCOP_d3lhvb_ (B:)
1c: SCOP_d3lhvc_ (C:)
1d: SCOP_d3lhvd_ (D:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Ribulose-phoshate binding barrel
(356)
Family
:
Decarboxylase
(172)
Protein domain
:
automated matches
(117)
Methanothermobacter thermautotrophicus [TaxId: 187420]
(66)
1a
d3lhva_
A:
1b
d3lhvb_
B:
1c
d3lhvc_
C:
1d
d3lhvd_
D:
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CATH Domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_OMPdecase_3lhvD01 (D:13-218)
1b: PFAM_OMPdecase_3lhvD02 (D:13-218)
1c: PFAM_OMPdecase_3lhvD03 (D:13-218)
1d: PFAM_OMPdecase_3lhvD04 (D:13-218)
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Clan
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TIM_barrel
(694)
Family
:
OMPdecase
(84)
Methanobacterium thermoautotrophicum (strain Delta H)
(55)
1a
OMPdecase-3lhvD01
D:13-218
1b
OMPdecase-3lhvD02
D:13-218
1c
OMPdecase-3lhvD03
D:13-218
1d
OMPdecase-3lhvD04
D:13-218
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Asymmetric Unit 1
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