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3LH0
Asym. Unit
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Asym.Unit (30 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (25 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE 53BP1 TANDEM TUDOR DOMAIN IN COMPLEX WITH P53K372ME2
Authors
:
S. Roy, T. G. Kutateladze
Date
:
21 Jan 10 (Deposition) - 23 Mar 10 (Release) - 12 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Biol. Unit 2: A,B (1x)
Keywords
:
Tandem Tudor Domain, Dimethylated P53 Peptide, Dna Repair, Cell Cycle, Dna Damage, Dna-Binding, Methylation, Transcription, Transcription Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Roy, C. A. Musselman, I. Kachirskaia, R. Hayashi, K. C. Glass, J. C. Nix, O. Gozani, E. Appella, T. G. Kutateladze
Structural Insight Into P53 Recognition By The 53Bp1 Tandem Tudor Domain.
J. Mol. Biol. V. 398 489 2010
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: N-DIMETHYL-LYSINE (MLYa)
2a: TRIETHYLENE GLYCOL (PGEa)
2b: TRIETHYLENE GLYCOL (PGEb)
3a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MLY
1
Mod. Amino Acid
N-DIMETHYL-LYSINE
2
PGE
2
Ligand/Ion
TRIETHYLENE GLYCOL
3
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:140 , LEU A:1534 , GLN A:1599
BINDING SITE FOR RESIDUE PGE A 201
2
AC2
SOFTWARE
HOH A:165 , LYS A:1514 , ARG A:1562 , GLU A:1564 , TYR A:1569
BINDING SITE FOR RESIDUE PGE A 202
3
AC3
SOFTWARE
HOH A:169 , LYS A:1559 , LYS A:1563 , GLU A:1564 , SER A:1565 , GLY A:1566 , GLU A:1573 , ARG A:1578
BINDING SITE FOR RESIDUE SO4 A 203
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_038689 (G1488W, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_038689
G
1488
W
TP53B_HUMAN
Polymorphism
11554564
A
G
1488
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(2, 2)
Info
All Exons
Exon 1.24a (A:1484-1556)
Exon 1.25b (A:1556-1603)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.23b/1.24a
2: Boundary 1.24a/1.25b
3: Boundary 1.25b/1.26
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000263801
1b
ENSE00001344404
chr15:
43802812-43802568
245
TP53B_HUMAN
-
0
0
-
-
1.4
ENST00000263801
4
ENSE00001713374
chr15:
43784666-43784482
185
TP53B_HUMAN
1-59
59
0
-
-
1.5
ENST00000263801
5
ENSE00001046179
chr15:
43784293-43784200
94
TP53B_HUMAN
60-91
32
0
-
-
1.6
ENST00000263801
6
ENSE00001046160
chr15:
43783951-43783867
85
TP53B_HUMAN
91-119
29
0
-
-
1.7
ENST00000263801
7
ENSE00001046169
chr15:
43773220-43773093
128
TP53B_HUMAN
119-162
44
0
-
-
1.8
ENST00000263801
8
ENSE00001046152
chr15:
43772215-43772057
159
TP53B_HUMAN
162-215
54
0
-
-
1.9
ENST00000263801
9
ENSE00001046208
chr15:
43771724-43771595
130
TP53B_HUMAN
215-258
44
0
-
-
1.10
ENST00000263801
10
ENSE00001046166
chr15:
43769957-43769791
167
TP53B_HUMAN
258-314
57
0
-
-
1.11
ENST00000263801
11
ENSE00001046193
chr15:
43767892-43767763
130
TP53B_HUMAN
314-357
44
0
-
-
1.12
ENST00000263801
12
ENSE00001046180
chr15:
43766965-43766871
95
TP53B_HUMAN
357-389
33
0
-
-
1.13
ENST00000263801
13
ENSE00001046161
chr15:
43762264-43762056
209
TP53B_HUMAN
389-458
70
0
-
-
1.14a
ENST00000263801
14a
ENSE00001046204
chr15:
43749416-43748090
1327
TP53B_HUMAN
459-901
443
0
-
-
1.15a
ENST00000263801
15a
ENSE00001046164
chr15:
43739683-43739564
120
TP53B_HUMAN
901-941
41
0
-
-
1.17
ENST00000263801
17
ENSE00001628086
chr15:
43738788-43738585
204
TP53B_HUMAN
941-1009
69
0
-
-
1.18a
ENST00000263801
18a
ENSE00001675565
chr15:
43733781-43733724
58
TP53B_HUMAN
1009-1028
20
0
-
-
1.19a
ENST00000263801
19a
ENSE00001595850
chr15:
43730614-43730522
93
TP53B_HUMAN
1028-1059
32
0
-
-
1.20b
ENST00000263801
20b
ENSE00001729133
chr15:
43724875-43724392
484
TP53B_HUMAN
1059-1220
162
0
-
-
1.21a
ENST00000263801
21a
ENSE00001648704
chr15:
43720366-43720214
153
TP53B_HUMAN
1221-1271
51
0
-
-
1.22a
ENST00000263801
22a
ENSE00001612038
chr15:
43714324-43714053
272
TP53B_HUMAN
1272-1362
91
0
-
-
1.23b
ENST00000263801
23b
ENSE00001657667
chr15:
43713372-43713223
150
TP53B_HUMAN
1362-1412
51
0
-
-
1.24a
ENST00000263801
24a
ENSE00001735071
chr15:
43712933-43712503
431
TP53B_HUMAN
1412-1556
145
1
A:1484-1556
73
1.25b
ENST00000263801
25b
ENSE00001666968
chr15:
43708614-43708423
192
TP53B_HUMAN
1556-1620
65
1
A:1556-1603
48
1.26
ENST00000263801
26
ENSE00001684657
chr15:
43708007-43707792
216
TP53B_HUMAN
1620-1692
73
0
-
-
1.28b
ENST00000263801
28b
ENSE00001734669
chr15:
43705532-43705317
216
TP53B_HUMAN
1692-1764
73
0
-
-
1.30
ENST00000263801
30
ENSE00001771292
chr15:
43701939-43701845
95
TP53B_HUMAN
1764-1795
32
0
-
-
1.31b
ENST00000263801
31b
ENSE00001727562
chr15:
43701294-43701095
200
TP53B_HUMAN
1796-1862
67
0
-
-
1.32
ENST00000263801
32
ENSE00001751396
chr15:
43700286-43700141
146
TP53B_HUMAN
1862-1911
50
0
-
-
1.33b
ENST00000263801
33b
ENSE00001841464
chr15:
43699768-43699407
362
TP53B_HUMAN
1911-1972
62
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_53_BP1_Tudor_3lh0A01 (A:1484-1603)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Tudor
(88)
Family
:
53-BP1_Tudor
(5)
Homo sapiens (Human)
(4)
1a
53-BP1_Tudor-3lh0A01
A:1484-1603
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