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3LFU
Asym. Unit
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Asym.Unit (122 KB)
Biol.Unit 1 (117 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI UVRD
Authors
:
S. Korolev, G. Waksman, T. M. Lohman
Date
:
18 Jan 10 (Deposition) - 02 Feb 11 (Release) - 30 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Dna Helicase, Sf1 Helicase, Atp-Binding, Dna Damage, Dna Repair, Dna Replication, Dna-Binding, Helicase, Hydrolase, Nucleotide-Binding, Sos Response
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Jia, S. Korolev, A. Niedziela-Majka, N. K. Maluf, G. H. Gauss, S. Myong, T. Ha, G. Waksman, T. M. Lohman
Rotations Of The 2B Sub-Domain Of E. Coli Uvrd Helicase/Translocase Coupled To Nucleotide And Dna Binding.
J. Mol. Biol. V. 411 633 2011
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
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No.
Name
Count
Type
Full Name
1
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:31 , GLY A:32 , GLN A:251 , ARG A:284 , GLY A:564 , ARG A:605 , HOH A:856 , HOH A:951 , HOH A:1341
BINDING SITE FOR RESIDUE SO4 A 1000
2
AC2
SOFTWARE
THR A:63 , ASN A:64 , LYS A:65 , ARG A:211 , HOH A:779 , HOH A:977 , HOH A:1090 , HOH A:1227
BINDING SITE FOR RESIDUE SO4 A 1001
3
AC3
SOFTWARE
GLY A:34 , LYS A:35 , THR A:36 , ARG A:37 , ARG A:73 , HOH A:839 , HOH A:892 , HOH A:908 , HOH A:1289 , HOH A:1295
BINDING SITE FOR RESIDUE SO4 A 1002
4
AC4
SOFTWARE
LYS A:135 , ARG A:460 , HOH A:875 , HOH A:1066 , HOH A:1107 , HOH A:1238 , HOH A:1338
BINDING SITE FOR RESIDUE SO4 A 1003
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_UVRD_ECOLI_001 (G30D, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_UVRD_ECOLI_001
*
G
30
D
UVRD_ECOLI
---
---
A
G
30
D
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: UVRD_HELICASE_ATP_BIND (A:8-286)
2: UVRD_HELICASE_CTER (A:287-564)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UVRD_HELICASE_ATP_BIND
PS51198
UvrD-like DNA helicase ATP-binding domain profile.
UVRD_ECOLI
8-286
1
A:8-286
2
UVRD_HELICASE_CTER
PS51217
UvrD-like DNA helicase C-terminal domain profile.
UVRD_ECOLI
287-564
1
A:287-564
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3lfua1 (A:3-315)
1b: SCOP_d3lfua2 (A:316-647)
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)
Protein Domains
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(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Escherichia coli [TaxId: 562]
(4)
1a
d3lfua1
A:3-315
1b
d3lfua2
A:316-647
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_UvrD_helicase_3lfuA01 (A:10-272)
2a: PFAM_UvrD_C_3lfuA02 (A:277-617)
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Clans
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Clan
:
P-loop_NTPase
(1112)
Family
:
UvrD-helicase
(5)
Escherichia coli (strain K12)
(2)
1a
UvrD-helicase-3lfuA01
A:10-272
Family
:
UvrD_C
(5)
Escherichia coli (strain K12)
(2)
2a
UvrD_C-3lfuA02
A:277-617
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Chain A
Asymmetric Unit 1
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Asym.Unit (122 KB)
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