PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3LFL
Biol. Unit 2
Info
Asym.Unit (125 KB)
Biol.Unit 1 (85 KB)
Biol.Unit 2 (80 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GLUTATHIONE TRANSFERASE OMEGA 1, DELTA 155
Authors
:
Brock J.
Date
:
18 Jan 10 (Deposition) - 24 Nov 10 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Keywords
:
Glutathione S-Transferase Omega 1 Del155, Protein-Glutathione Complex, N-Terminal Thioredoxin-Like Domain, C-Terminal Alpha- Helical Domain, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Zhou, J. Brock, M. G. Casarotto, A. J. Oakley, P. G. Board
Novel Folding And Stability Defects Cause A Deficiency Of Human Glutathione Transferase Omega 1.
J. Biol. Chem. V. 286 4271 2011
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
1b: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTb)
1c: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTc)
2a: GLUTATHIONE (GSHa)
2b: GLUTATHIONE (GSHb)
2c: GLUTATHIONE (GSHc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DTT
2
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
2
GSH
2
Ligand/Ion
GLUTATHIONE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
CYS B:32 , PHE B:34 , LYS B:59 , LEU B:71 , VAL B:72 , PRO B:73 , GLU B:85 , SER B:86 , HOH B:271 , HOH B:294
BINDING SITE FOR RESIDUE GSH B 241
2
AC4
SOFTWARE
LYS B:143 , ARG B:147 , GLU B:190 , CYS B:191 , HOH B:283
BINDING SITE FOR RESIDUE DTT B 242
3
AC5
SOFTWARE
ARG C:147 , CYS C:191
BINDING SITE FOR RESIDUE DTT C 241
4
AC6
SOFTWARE
CYS C:32 , PHE C:34 , LEU C:56 , LYS C:59 , LEU C:71 , VAL C:72 , PRO C:73 , GLU C:85 , SER C:86 , HOH C:244 , HOH C:289 , HOH C:298
BINDING SITE FOR RESIDUE GSH C 242
[
close Site info
]
SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_061231 (C32Y, chain B/C, )
2: VAR_029269 (S86C, chain B/C, )
3: VAR_016811 (A140D, chain B/C, )
4: VAR_024484 (E207K, chain B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_061231
C
32
Y
GSTO1_HUMAN
Polymorphism
45529437
B/C
C
32
Y
2
UniProt
VAR_029269
S
86
C
GSTO1_HUMAN
Polymorphism
11509436
B/C
S
86
C
3
UniProt
VAR_016811
A
140
D
GSTO1_HUMAN
Polymorphism
4925
B/C
A
140
D
4
UniProt
VAR_024484
E
208
K
GSTO1_HUMAN
Polymorphism
11509438
B/C
E
207
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GST_NTER (B:22-101,C:22-101)
2: GST_CTER (B:106-229,C:106-228)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_NTER
PS50404
Soluble glutathione S-transferase N-terminal domain profile.
GSTO1_HUMAN
22-101
2
-
B:22-101
C:22-101
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTO1_HUMAN
106-230
2
-
B:106-229
C:106-228
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d3lfla2 (A:103-240)
1b: SCOP_d3lflb2 (B:103-230)
1c: SCOP_d3lflc2 (C:103-228)
2a: SCOP_d3lfla1 (A:5-102)
2b: SCOP_d3lflb1 (B:5-102)
2c: SCOP_d3lflc1 (C:5-102)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
automated matches
(50)
Human (Homo sapiens) [TaxId: 9606]
(35)
1a
d3lfla2
A:103-240
1b
d3lflb2
B:103-230
1c
d3lflc2
C:103-228
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
automated matches
(7)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d3lfla1
A:5-102
2b
d3lflb1
B:5-102
2c
d3lflc1
C:5-102
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_GST_C_3lflC01 (C:107-209)
1b: PFAM_GST_C_3lflC02 (C:107-209)
1c: PFAM_GST_C_3lflC03 (C:107-209)
2a: PFAM_GST_N_3_3lflC04 (C:26-101)
2b: PFAM_GST_N_3_3lflC05 (C:26-101)
2c: PFAM_GST_N_3_3lflC06 (C:26-101)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Homo sapiens (Human)
(47)
1a
GST_C-3lflC01
C:107-209
1b
GST_C-3lflC02
C:107-209
1c
GST_C-3lflC03
C:107-209
Clan
:
Thioredoxin
(367)
Family
:
GST_N_3
(20)
Homo sapiens (Human)
(5)
2a
GST_N_3-3lflC04
C:26-101
2b
GST_N_3-3lflC05
C:26-101
2c
GST_N_3-3lflC06
C:26-101
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Chain C
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (125 KB)
Header - Asym.Unit
Biol.Unit 1 (85 KB)
Header - Biol.Unit 1
Biol.Unit 2 (80 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3LFL
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
