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3LFL
Asym. Unit
Info
Asym.Unit (125 KB)
Biol.Unit 1 (85 KB)
Biol.Unit 2 (80 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GLUTATHIONE TRANSFERASE OMEGA 1, DELTA 155
Authors
:
Brock J.
Date
:
18 Jan 10 (Deposition) - 24 Nov 10 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Keywords
:
Glutathione S-Transferase Omega 1 Del155, Protein-Glutathione Complex, N-Terminal Thioredoxin-Like Domain, C-Terminal Alpha- Helical Domain, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Zhou, J. Brock, M. G. Casarotto, A. J. Oakley, P. G. Board
Novel Folding And Stability Defects Cause A Deficiency Of Human Glutathione Transferase Omega 1.
J. Biol. Chem. V. 286 4271 2011
[
close entry info
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
1b: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTb)
1c: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTc)
2a: GLUTATHIONE (GSHa)
2b: GLUTATHIONE (GSHb)
2c: GLUTATHIONE (GSHc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DTT
3
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
2
GSH
3
Ligand/Ion
GLUTATHIONE
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:32 , PHE A:34 , LEU A:56 , LYS A:59 , LEU A:71 , VAL A:72 , PRO A:73 , GLU A:85 , SER A:86 , HOH A:248 , HOH A:275 , HOH A:304 , HOH A:362
BINDING SITE FOR RESIDUE GSH A 241
2
AC2
SOFTWARE
LYS A:143 , ARG A:147 , CYS A:191
BINDING SITE FOR RESIDUE DTT A 242
3
AC3
SOFTWARE
CYS B:32 , PHE B:34 , LYS B:59 , LEU B:71 , VAL B:72 , PRO B:73 , GLU B:85 , SER B:86 , HOH B:271 , HOH B:294
BINDING SITE FOR RESIDUE GSH B 241
4
AC4
SOFTWARE
LYS B:143 , ARG B:147 , GLU B:190 , CYS B:191 , HOH B:283
BINDING SITE FOR RESIDUE DTT B 242
5
AC5
SOFTWARE
ARG C:147 , CYS C:191
BINDING SITE FOR RESIDUE DTT C 241
6
AC6
SOFTWARE
CYS C:32 , PHE C:34 , LEU C:56 , LYS C:59 , LEU C:71 , VAL C:72 , PRO C:73 , GLU C:85 , SER C:86 , HOH C:244 , HOH C:289 , HOH C:298
BINDING SITE FOR RESIDUE GSH C 242
[
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SAPs(SNPs)/Variants
(5, 13)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_061231 (C32Y, chain A/B/C, )
2: VAR_029269 (S86C, chain A/B/C, )
3: VAR_016811 (A140D, chain A/B/C, )
4: VAR_024484 (E207K, chain A/B/C, )
5: VAR_026583 (A235V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_061231
C
32
Y
GSTO1_HUMAN
Polymorphism
45529437
A/B/C
C
32
Y
2
UniProt
VAR_029269
S
86
C
GSTO1_HUMAN
Polymorphism
11509436
A/B/C
S
86
C
3
UniProt
VAR_016811
A
140
D
GSTO1_HUMAN
Polymorphism
4925
A/B/C
A
140
D
4
UniProt
VAR_024484
E
208
K
GSTO1_HUMAN
Polymorphism
11509438
A/B/C
E
207
K
5
UniProt
VAR_026583
A
236
V
GSTO1_HUMAN
Polymorphism
11509439
A
A
235
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: GST_NTER (A:22-101,B:22-101,C:22-101)
2: GST_CTER (A:106-229,B:106-229,C:106-228)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_NTER
PS50404
Soluble glutathione S-transferase N-terminal domain profile.
GSTO1_HUMAN
22-101
3
A:22-101
B:22-101
C:22-101
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTO1_HUMAN
106-230
3
A:106-229
B:106-229
C:106-228
[
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]
Exons
(6, 18)
Info
All Exons
Exon 1.4a (A:5-12 | B:5-12 | C:5-12)
Exon 1.5b (A:12-48 | B:12-48 | C:12-48)
Exon 1.6 (A:48-122 | B:48-122 | C:48-122)
Exon 1.7 (A:123-154 (gaps) | B:123-154 (gaps...)
Exon 1.8 (A:155-190 | B:155-190 | C:155-190)
Exon 1.9d (A:190-240 | B:190-230 | C:190-228)
View:
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All Exon Boundaries
1: Boundary -/1.4a
2: Boundary 1.4a/1.5b
3: Boundary 1.5b/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9d
7: Boundary 1.9d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000369713
4a
ENSE00001833010
chr10:
106014493-106014720
228
GSTO1_HUMAN
1-12
12
3
A:5-12
B:5-12
C:5-12
8
8
8
1.5b
ENST00000369713
5b
ENSE00001776578
chr10:
106014921-106015029
109
GSTO1_HUMAN
12-48
37
3
A:12-48
B:12-48
C:12-48
37
37
37
1.6
ENST00000369713
6
ENSE00000987654
chr10:
106019334-106019556
223
GSTO1_HUMAN
48-122
75
3
A:48-122
B:48-122
C:48-122
75
75
75
1.7
ENST00000369713
7
ENSE00000987655
chr10:
106022737-106022835
99
GSTO1_HUMAN
123-155
33
3
A:123-154 (gaps)
B:123-154 (gaps)
C:123-154 (gaps)
33
33
33
1.8
ENST00000369713
8
ENSE00000987656
chr10:
106025842-106025948
107
GSTO1_HUMAN
156-191
36
3
A:155-190
B:155-190
C:155-190
36
36
36
1.9d
ENST00000369713
9d
ENSE00001881019
chr10:
106027010-106027215
206
GSTO1_HUMAN
191-241
51
3
A:190-240
B:190-230
C:190-228
51
41
39
[
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]
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d3lfla2 (A:103-240)
1b: SCOP_d3lflb2 (B:103-230)
1c: SCOP_d3lflc2 (C:103-228)
2a: SCOP_d3lfla1 (A:5-102)
2b: SCOP_d3lflb1 (B:5-102)
2c: SCOP_d3lflc1 (C:5-102)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
automated matches
(50)
Human (Homo sapiens) [TaxId: 9606]
(35)
1a
d3lfla2
A:103-240
1b
d3lflb2
B:103-230
1c
d3lflc2
C:103-228
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
automated matches
(7)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d3lfla1
A:5-102
2b
d3lflb1
B:5-102
2c
d3lflc1
C:5-102
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_GST_C_3lflC01 (C:107-209)
1b: PFAM_GST_C_3lflC02 (C:107-209)
1c: PFAM_GST_C_3lflC03 (C:107-209)
2a: PFAM_GST_N_3_3lflC04 (C:26-101)
2b: PFAM_GST_N_3_3lflC05 (C:26-101)
2c: PFAM_GST_N_3_3lflC06 (C:26-101)
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Clans
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)
(
)
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(
)
(
)
Organisms
(
)
(
)
Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Homo sapiens (Human)
(47)
1a
GST_C-3lflC01
C:107-209
1b
GST_C-3lflC02
C:107-209
1c
GST_C-3lflC03
C:107-209
Clan
:
Thioredoxin
(367)
Family
:
GST_N_3
(20)
Homo sapiens (Human)
(5)
2a
GST_N_3-3lflC04
C:26-101
2b
GST_N_3-3lflC05
C:26-101
2c
GST_N_3-3lflC06
C:26-101
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