PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3LEO
Asym. Unit
Info
Asym.Unit (66 KB)
Biol.Unit 1 (673 KB)
Biol.Unit 2 (170 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF HUMAN LEUKOTRIENE C4 SYNTHASE MUTANT R31Q IN COMPLEX WITH GLUTATHIONE
Authors
:
D. Niegowski, D. Martinez-Molina, A. Rinaldo-Matthis, P. Nordlund, J. Haeggstrom
Date
:
15 Jan 10 (Deposition) - 27 Oct 10 (Release) - 26 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (12x)
Biol. Unit 2: A (3x)
Keywords
:
Leukotriene C4 Synthase, Endoplasmic Reticulum, Leukotriene Biosynthesis, Lyase, Membrane, Nucleus, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Rinaldo-Matthis, A. Wetterholm, D. Martinez Molina, J. Holm, D. Niegowski, E. Ohlson, P. Nordlund, R. Morgenstern, J. Z. Haeggstro
Arginine 104 Is A Key Catalytic Residue In Leukotriene C4 Synthase.
J. Biol. Chem. V. 285 40771 2010
[
close entry info
]
Hetero Components
(7, 15)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: GLUTATHIONE (GSHa)
3a: DODECYL-BETA-D-MALTOSIDE (LMTa)
4a: NICKEL (II) ION (NIa)
4b: NICKEL (II) ION (NIb)
5a: PALMITOLEIC ACID (PAMa)
5b: PALMITOLEIC ACID (PAMb)
6a: PALMITIC ACID (PLMa)
6b: PALMITIC ACID (PLMb)
6c: PALMITIC ACID (PLMc)
6d: PALMITIC ACID (PLMd)
6e: PALMITIC ACID (PLMe)
6f: PALMITIC ACID (PLMf)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
GSH
1
Ligand/Ion
GLUTATHIONE
3
LMT
1
Ligand/Ion
DODECYL-BETA-D-MALTOSIDE
4
NI
2
Ligand/Ion
NICKEL (II) ION
5
PAM
2
Ligand/Ion
PALMITOLEIC ACID
6
PLM
6
Ligand/Ion
PALMITIC ACID
7
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:4 , ILE A:72 , HOH A:330 , HOH A:341
BINDING SITE FOR RESIDUE PAM A 201
02
AC2
SOFTWARE
LEU A:135
BINDING SITE FOR RESIDUE PLM A 202
03
AC3
SOFTWARE
LEU A:126 , PHE A:130 , PAM A:215
BINDING SITE FOR RESIDUE PLM A 203
04
AC4
SOFTWARE
GLN A:95
BINDING SITE FOR RESIDUE PLM A 204
05
AC5
SOFTWARE
ARG A:48 , SER A:100 , ALA A:101 , GLN A:102 , HOH A:321 , HOH A:376
BINDING SITE FOR RESIDUE SO4 A 205
06
AC6
SOFTWARE
TRP A:116
BINDING SITE FOR RESIDUE PLM A 207
07
AC7
SOFTWARE
LEU A:14 , PHE A:88
BINDING SITE FOR RESIDUE PLM A 208
08
AC8
SOFTWARE
ARG A:34 , HOH A:335
BINDING SITE FOR RESIDUE SO4 A 209
09
AC9
SOFTWARE
HIS A:-1 , HIS A:1
BINDING SITE FOR RESIDUE NI A 210
10
BC1
SOFTWARE
HIS A:-2 , HIS A:-4
BINDING SITE FOR RESIDUE NI A 211
11
BC2
SOFTWARE
SER A:23 , VAL A:26 , ILE A:27 , ARG A:30 , TYR A:50 , ARG A:51 , GLN A:53 , ASN A:55 , GLU A:58 , TYR A:59 , TYR A:93 , TYR A:97 , ARG A:104 , LEU A:108 , LMT A:213 , HOH A:326
BINDING SITE FOR RESIDUE GSH A 212
12
BC3
SOFTWARE
ALA A:20 , ILE A:27 , GLN A:31 , SER A:36 , PRO A:37 , TYR A:59 , ALA A:101 , GLN A:102 , ARG A:104 , LEU A:105 , TYR A:109 , TRP A:116 , GSH A:212 , HOH A:334 , HOH A:364 , HOH A:368 , HOH A:376
BINDING SITE FOR RESIDUE LMT A 213
13
BC4
SOFTWARE
ARG A:113
BINDING SITE FOR RESIDUE GOL A 214
14
BC5
SOFTWARE
ALA A:10 , LEU A:84 , LEU A:143 , PLM A:203 , HOH A:367
BINDING SITE FOR RESIDUE PAM A 215
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_042736 (R142Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042736
R
142
Q
LTC4S_HUMAN
Polymorphism
11541078
A
R
142
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FLAP_GST2_LTC4S (A:42-56)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FLAP_GST2_LTC4S
PS01297
FLAP/GST2/LTC4S family signature.
LTC4S_HUMAN
42-56
1
A:42-56
[
close PROSITE info
]
Exons
(5, 5)
Info
All Exons
Exon 1.1c (A:1-20)
Exon 1.3b (A:20-53)
Exon 1.3f (A:53-77)
Exon 1.3g (A:77-104)
Exon 1.4e (A:104-145)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1c
2: Boundary 1.1c/1.3b
3: Boundary 1.3b/1.3f
4: Boundary 1.3f/1.3g
5: Boundary 1.3g/1.4e
6: Boundary 1.4e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000292596
1c
ENSE00001194180
chr5:
179220987-179221139
153
LTC4S_HUMAN
1-20
20
1
A:1-20
20
1.3b
ENST00000292596
3b
ENSE00001056000
chr5:
179222585-179222684
100
LTC4S_HUMAN
20-53
34
1
A:20-53
34
1.3f
ENST00000292596
3f
ENSE00001255861
chr5:
179222787-179222857
71
LTC4S_HUMAN
53-77
25
1
A:53-77
25
1.3g
ENST00000292596
3g
ENSE00001056001
chr5:
179222942-179223023
82
LTC4S_HUMAN
77-104
28
1
A:77-104
28
1.4e
ENST00000292596
4e
ENSE00002050377
chr5:
179223254-179223513
260
LTC4S_HUMAN
104-150
47
1
A:104-145
42
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_MAPEG_3leoA01 (A:8-131)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: MAPEG]
(6)
Family
:
MAPEG
(6)
Homo sapiens (Human)
(6)
1a
MAPEG-3leoA01
A:8-131
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (66 KB)
Header - Asym.Unit
Biol.Unit 1 (673 KB)
Header - Biol.Unit 1
Biol.Unit 2 (170 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3LEO
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help