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3LE9
Asym. Unit
Info
Asym.Unit (91 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF TACE WITH INDAZOLINONE-PHENYL-HYDANTOIN INHIBITOR
Authors
:
P. Orth
Date
:
14 Jan 10 (Deposition) - 08 Dec 10 (Release) - 08 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Glycoprotein, Membrane, Metal-Binding, Metalloprotease, Notch Signaling Pathway, Phosphoprotein, Protease, Transmembrane, Zymogen, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Yu, L. Tong, S. H. Kim, M. K. Wong, L. Chen, D. Y. Yang, B. B. Shankar, B. J. Lavey, G. Zhou, A. Kosinski, R. Rizvi, D. Li, R. J. Feltz, J. J. Piwinski, K. E. Rosner, N. Y. Shih, M. A. Siddiqui, Z. Guo, P. Orth, H. Shah, J. Sun, S. Umland, D. J. Lundell, X. Niu, J. A. Kozlowski
Biaryl Substituted Hydantoin Compounds As Tace Inhibitors.
Bioorg. Med. Chem. Lett. V. 20 5286 2010
[
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]
Hetero Components
(3, 5)
Info
All Hetero Components
1a: (5R)-5-[(5-METHOXY-3-OXO-1,3-DIHYD... (727a)
1b: (5R)-5-[(5-METHOXY-3-OXO-1,3-DIHYD... (727b)
2a: ISOPROPYL ALCOHOL (IPAa)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
727
2
Ligand/Ion
(5R)-5-[(5-METHOXY-3-OXO-1,3-DIHYDRO-2H-INDAZOL-2-YL)METHYL]-5-PHENYLIMIDAZOLIDINE-2,4-DIONE
2
IPA
1
Ligand/Ion
ISOPROPYL ALCOHOL
3
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:405 , HIS A:409 , HIS A:415 , 727 A:485 , HOH A:573
BINDING SITE FOR RESIDUE ZN A 1
2
AC2
SOFTWARE
ZN A:1 , LYS A:315 , THR A:347 , LEU A:348 , GLY A:349 , LEU A:401 , VAL A:402 , HIS A:405 , GLU A:406 , HIS A:409 , HIS A:415 , TYR A:436 , PRO A:437 , HOH A:490 , HOH A:573
BINDING SITE FOR RESIDUE 727 A 485
3
AC3
SOFTWARE
LEU A:285 , SER A:287 , PRO A:288 , GLN A:289 , ASN A:299
BINDING SITE FOR RESIDUE IPA A 7
4
AC4
SOFTWARE
HIS B:405 , HIS B:409 , HIS B:415 , 727 B:485
BINDING SITE FOR RESIDUE ZN B 2
5
AC5
SOFTWARE
ZN B:2 , THR B:347 , LEU B:348 , GLY B:349 , LEU B:350 , LEU B:401 , VAL B:402 , HIS B:405 , GLU B:406 , HIS B:409 , HIS B:415 , TYR B:436 , PRO B:437 , ALA B:439 , HOH B:512 , HOH B:572
BINDING SITE FOR RESIDUE 727 B 485
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ADAM_MEPRO (A:223-474,B:223-473)
2: ZINC_PROTEASE (A:402-411,B:402-411)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADAM_MEPRO
PS50215
ADAM type metalloprotease domain profile.
ADA17_HUMAN
223-474
2
A:223-474
B:223-473
2
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ADA17_HUMAN
402-411
2
A:402-411
B:402-411
[
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Exons
(7, 14)
Info
All Exons
Exon 1.6 (A:218-251 | B:220-251)
Exon 1.7 (A:252-281 | B:252-281)
Exon 1.9 (A:282-319 | B:282-319)
Exon 1.10 (A:320-368 (gaps) | B:320-368 (gaps...)
Exon 1.11 (A:368-397 | B:368-397)
Exon 1.12 (A:398-448 | B:398-448)
Exon 1.13 (A:449-474 | B:449-473)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5a/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.11
6: Boundary 1.11/1.12
7: Boundary 1.12/1.13
8: Boundary 1.13/1.14
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000310823
1b
ENSE00001490067
chr2:
9695917-9695638
280
ADA17_HUMAN
1-33
33
0
-
-
1.2
ENST00000310823
2
ENSE00001001245
chr2:
9683414-9683282
133
ADA17_HUMAN
33-77
45
0
-
-
1.3
ENST00000310823
3
ENSE00001001246
chr2:
9676957-9676827
131
ADA17_HUMAN
77-121
45
0
-
-
1.4
ENST00000310823
4
ENSE00001001240
chr2:
9676051-9675963
89
ADA17_HUMAN
121-150
30
0
-
-
1.5a
ENST00000310823
5a
ENSE00001070593
chr2:
9668083-9667915
169
ADA17_HUMAN
151-207
57
0
-
-
1.6
ENST00000310823
6
ENSE00001070592
chr2:
9666373-9666240
134
ADA17_HUMAN
207-251
45
2
A:218-251
B:220-251
34
32
1.7
ENST00000310823
7
ENSE00001070603
chr2:
9663467-9663378
90
ADA17_HUMAN
252-281
30
2
A:252-281
B:252-281
30
30
1.9
ENST00000310823
9
ENSE00001070599
chr2:
9661445-9661332
114
ADA17_HUMAN
282-319
38
2
A:282-319
B:282-319
38
38
1.10
ENST00000310823
10
ENSE00001070595
chr2:
9658376-9658232
145
ADA17_HUMAN
320-368
49
2
A:320-368 (gaps)
B:320-368 (gaps)
49
49
1.11
ENST00000310823
11
ENSE00001070597
chr2:
9658118-9658030
89
ADA17_HUMAN
368-397
30
2
A:368-397
B:368-397
30
30
1.12
ENST00000310823
12
ENSE00001001237
chr2:
9650260-9650108
153
ADA17_HUMAN
398-448
51
2
A:398-448
B:398-448
51
51
1.13
ENST00000310823
13
ENSE00001001234
chr2:
9645494-9645295
200
ADA17_HUMAN
449-515
67
2
A:449-474
B:449-473
26
25
1.14
ENST00000310823
14
ENSE00001001242
chr2:
9642405-9642302
104
ADA17_HUMAN
515-550
36
0
-
-
1.15
ENST00000310823
15
ENSE00001001233
chr2:
9637377-9637243
135
ADA17_HUMAN
550-595
46
0
-
-
1.16
ENST00000310823
16
ENSE00001001250
chr2:
9634896-9634766
131
ADA17_HUMAN
595-638
44
0
-
-
1.17
ENST00000310823
17
ENSE00001001241
chr2:
9633954-9633876
79
ADA17_HUMAN
639-665
27
0
-
-
1.18
ENST00000310823
18
ENSE00001490117
chr2:
9633115-9633027
89
ADA17_HUMAN
665-694
30
0
-
-
1.19
ENST00000310823
19
ENSE00001001249
chr2:
9631280-9631230
51
ADA17_HUMAN
695-711
17
0
-
-
1.20
ENST00000310823
20
ENSE00001367317
chr2:
9630647-9628615
2033
ADA17_HUMAN
712-824
113
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3le9a_ (A:)
1b: SCOP_d3le9b_ (B:)
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Classes
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)
(
)
Folds
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(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
TNF-alpha converting enzyme, TACE, catalytic domain
(22)
Protein domain
:
TNF-alpha converting enzyme, TACE, catalytic domain
(20)
Human (Homo sapiens) [TaxId: 9606]
(20)
1a
d3le9a_
A:
1b
d3le9b_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_M84_3le9B01 (B:221-451)
1b: PFAM_Peptidase_M84_3le9B02 (B:221-451)
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Clans
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(
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Families
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(
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Organisms
(
)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M84
(10)
Homo sapiens (Human)
(10)
1a
Peptidase_M84-3le9B01
B:221-451
1b
Peptidase_M84-3le9B02
B:221-451
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