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3LE8
Biol. Unit 1
Info
Asym.Unit (109 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PANTOTHENATE SYNTHETASE AT 1.70 ANGSTROM RESOLUTION IN COMPLEX WITH 2-(2-((BENZOFURAN-2-CARBOXAMIDO)METHYL)-5-METHOXY-1H-INDOL-1-YL)ACETIC ACID
Authors
:
H. L. Silvestre, A. W. Hung, P. Sledz, A. Ciulli, T. L. Blundell, C. Abell
Date
:
14 Jan 10 (Deposition) - 14 Apr 10 (Release) - 14 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Fragment-Based Drug Discovery, Iloe, Fragment Linking, Atp- Binding, Cytoplasm, Ligase, Magnesium, Metal-Binding, Nucleotide-Binding, Pantothenate Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Sledz, H. L. Silvestre, A. W. Hung, A. Ciulli, T. L. Blundell, C. Abell
Optimization Of The Interligand Overhauser Effect For Fragment Linking: Application To Inhibitor Discovery Against Mycobacterium Tuberculosis Pantothenate Synthetase.
J. Am. Chem. Soc. V. 132 4544 2010
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: 2-(2-((BENZOFURAN-2-CARBOXAMIDO)ME... (2B5a)
1b: 2-(2-((BENZOFURAN-2-CARBOXAMIDO)ME... (2B5b)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
3a: ETHANOL (EOHa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2B5
2
Ligand/Ion
2-(2-((BENZOFURAN-2-CARBOXAMIDO)METHYL)-5-METHOXY-1H-INDOL-1-YL)ACETIC ACID
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
EOH
1
Ligand/Ion
ETHANOL
4
GOL
4
Ligand/Ion
GLYCEROL
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:38 , THR A:39 , MET A:40 , HIS A:44 , GLY A:46 , HIS A:47 , LEU A:50 , VAL A:143 , PHE A:157 , LYS A:160 , GLN A:164 , PRO A:185 , THR A:186 , VAL A:187 , MET A:195 , SER A:196 , SER A:197 , HOH A:440 , HOH A:462 , HOH A:533
BINDING SITE FOR RESIDUE 2B5 A 301
02
AC2
SOFTWARE
MET A:109 , TYR A:110 , GLY A:113 , LEU A:114 , ARG A:115 , THR A:116 , THR A:117 , LYS A:145 , ASP B:174
BINDING SITE FOR RESIDUE EDO A 302
03
AC3
SOFTWARE
PRO A:111 , ASP A:112
BINDING SITE FOR RESIDUE EDO A 303
04
AC4
SOFTWARE
MET A:71 , LEU A:114 , THR A:134 , HOH A:627
BINDING SITE FOR RESIDUE GOL A 304
05
AC5
SOFTWARE
MET A:71 , LEU A:114
BINDING SITE FOR RESIDUE EDO A 305
06
AC6
SOFTWARE
LEU A:252 , HOH A:467
BINDING SITE FOR RESIDUE EDO A 306
07
AC7
SOFTWARE
ALA A:226 , ALA B:208 , ALA B:209 , VAL B:211
BINDING SITE FOR RESIDUE EOH A 307
08
AC8
SOFTWARE
ASN A:176 , HOH A:371 , HOH A:506
BINDING SITE FOR RESIDUE EDO A 308
09
AC9
SOFTWARE
PRO B:38 , THR B:39 , MET B:40 , HIS B:44 , GLY B:46 , HIS B:47 , VAL B:143 , PRO B:185 , VAL B:187 , MET B:195 , SER B:196 , HOH B:479
BINDING SITE FOR RESIDUE 2B5 B 301
10
BC1
SOFTWARE
LEU A:114 , ARG A:115 , THR A:117 , GLN B:119 , PRO B:120 , GLY B:121
BINDING SITE FOR RESIDUE GOL B 302
11
BC2
SOFTWARE
ARG A:169 , ALA A:173 , ARG B:115 , HOH B:391 , HOH B:501 , HOH B:530
BINDING SITE FOR RESIDUE GOL B 303
12
BC3
SOFTWARE
GLN A:148 , ARG A:151 , LEU B:147 , GLN B:148 , LEU B:177 , ASP B:178 , VAL B:179 , HOH B:371
BINDING SITE FOR RESIDUE GOL B 304
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3le8a_ (A:)
1b: SCOP_d3le8b_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(46)
Protein domain
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(44)
Mycobacterium tuberculosis [TaxId: 1773]
(39)
1a
d3le8a_
A:
1b
d3le8b_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3le8B02 (B:186-288)
1b: CATH_3le8A02 (A:186-290)
2a: CATH_3le8A01 (A:3-185)
2b: CATH_3le8B01 (B:1-185)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Pantoate--beta-alanine Ligase; Chain: A,domain 2
(43)
Homologous Superfamily
:
[code=3.30.1300.10, no name defined]
(36)
Mycobacterium tuberculosis. Organism_taxid: 83332. Strain: h37rv.
(1)
1a
3le8B02
B:186-288
1b
3le8A02
A:186-290
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Mycobacterium tuberculosis. Organism_taxid: 83332. Strain: h37rv.
(1)
2a
3le8A01
A:3-185
2b
3le8B01
B:1-185
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pantoate_ligase_3le8B01 (B:11-285)
1b: PFAM_Pantoate_ligase_3le8B02 (B:11-285)
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Clan
:
HUP
(230)
Family
:
Pantoate_ligase
(16)
Mycobacterium tuberculosis
(7)
1a
Pantoate_ligase-3le8B01
B:11-285
1b
Pantoate_ligase-3le8B02
B:11-285
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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Asym.Unit (109 KB)
Header - Asym.Unit
Biol.Unit 1 (102 KB)
Header - Biol.Unit 1
Biol.Unit 2 (103 KB)
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