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3LE8
Asym. Unit
Info
Asym.Unit (109 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PANTOTHENATE SYNTHETASE AT 1.70 ANGSTROM RESOLUTION IN COMPLEX WITH 2-(2-((BENZOFURAN-2-CARBOXAMIDO)METHYL)-5-METHOXY-1H-INDOL-1-YL)ACETIC ACID
Authors
:
H. L. Silvestre, A. W. Hung, P. Sledz, A. Ciulli, T. L. Blundell, C. Abell
Date
:
14 Jan 10 (Deposition) - 14 Apr 10 (Release) - 14 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Fragment-Based Drug Discovery, Iloe, Fragment Linking, Atp- Binding, Cytoplasm, Ligase, Magnesium, Metal-Binding, Nucleotide-Binding, Pantothenate Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Sledz, H. L. Silvestre, A. W. Hung, A. Ciulli, T. L. Blundell, C. Abell
Optimization Of The Interligand Overhauser Effect For Fragment Linking: Application To Inhibitor Discovery Against Mycobacterium Tuberculosis Pantothenate Synthetase.
J. Am. Chem. Soc. V. 132 4544 2010
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: 2-(2-((BENZOFURAN-2-CARBOXAMIDO)ME... (2B5a)
1b: 2-(2-((BENZOFURAN-2-CARBOXAMIDO)ME... (2B5b)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
3a: ETHANOL (EOHa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2B5
2
Ligand/Ion
2-(2-((BENZOFURAN-2-CARBOXAMIDO)METHYL)-5-METHOXY-1H-INDOL-1-YL)ACETIC ACID
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
EOH
1
Ligand/Ion
ETHANOL
4
GOL
4
Ligand/Ion
GLYCEROL
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:38 , THR A:39 , MET A:40 , HIS A:44 , GLY A:46 , HIS A:47 , LEU A:50 , VAL A:143 , PHE A:157 , LYS A:160 , GLN A:164 , PRO A:185 , THR A:186 , VAL A:187 , MET A:195 , SER A:196 , SER A:197 , HOH A:440 , HOH A:462 , HOH A:533
BINDING SITE FOR RESIDUE 2B5 A 301
02
AC2
SOFTWARE
MET A:109 , TYR A:110 , GLY A:113 , LEU A:114 , ARG A:115 , THR A:116 , THR A:117 , LYS A:145 , ASP B:174
BINDING SITE FOR RESIDUE EDO A 302
03
AC3
SOFTWARE
PRO A:111 , ASP A:112
BINDING SITE FOR RESIDUE EDO A 303
04
AC4
SOFTWARE
MET A:71 , LEU A:114 , THR A:134 , HOH A:627
BINDING SITE FOR RESIDUE GOL A 304
05
AC5
SOFTWARE
MET A:71 , LEU A:114
BINDING SITE FOR RESIDUE EDO A 305
06
AC6
SOFTWARE
LEU A:252 , HOH A:467
BINDING SITE FOR RESIDUE EDO A 306
07
AC7
SOFTWARE
ALA A:226 , ALA B:208 , ALA B:209 , VAL B:211
BINDING SITE FOR RESIDUE EOH A 307
08
AC8
SOFTWARE
ASN A:176 , HOH A:371 , HOH A:506
BINDING SITE FOR RESIDUE EDO A 308
09
AC9
SOFTWARE
PRO B:38 , THR B:39 , MET B:40 , HIS B:44 , GLY B:46 , HIS B:47 , VAL B:143 , PRO B:185 , VAL B:187 , MET B:195 , SER B:196 , HOH B:479
BINDING SITE FOR RESIDUE 2B5 B 301
10
BC1
SOFTWARE
LEU A:114 , ARG A:115 , THR A:117 , GLN B:119 , PRO B:120 , GLY B:121
BINDING SITE FOR RESIDUE GOL B 302
11
BC2
SOFTWARE
ARG A:169 , ALA A:173 , ARG B:115 , HOH B:391 , HOH B:501 , HOH B:530
BINDING SITE FOR RESIDUE GOL B 303
12
BC3
SOFTWARE
GLN A:148 , ARG A:151 , LEU B:147 , GLN B:148 , LEU B:177 , ASP B:178 , VAL B:179 , HOH B:371
BINDING SITE FOR RESIDUE GOL B 304
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3le8a_ (A:)
1b: SCOP_d3le8b_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(46)
Protein domain
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(44)
Mycobacterium tuberculosis [TaxId: 1773]
(39)
1a
d3le8a_
A:
1b
d3le8b_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3le8B02 (B:186-288)
1b: CATH_3le8A02 (A:186-290)
2a: CATH_3le8A01 (A:3-185)
2b: CATH_3le8B01 (B:1-185)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Pantoate--beta-alanine Ligase; Chain: A,domain 2
(43)
Homologous Superfamily
:
[code=3.30.1300.10, no name defined]
(36)
Mycobacterium tuberculosis. Organism_taxid: 83332. Strain: h37rv.
(1)
1a
3le8B02
B:186-288
1b
3le8A02
A:186-290
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Mycobacterium tuberculosis. Organism_taxid: 83332. Strain: h37rv.
(1)
2a
3le8A01
A:3-185
2b
3le8B01
B:1-185
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pantoate_ligase_3le8B01 (B:11-285)
1b: PFAM_Pantoate_ligase_3le8B02 (B:11-285)
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Clan
:
HUP
(230)
Family
:
Pantoate_ligase
(16)
Mycobacterium tuberculosis
(7)
1a
Pantoate_ligase-3le8B01
B:11-285
1b
Pantoate_ligase-3le8B02
B:11-285
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (109 KB)
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