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3LCE
Asym. Unit
Info
Asym.Unit (186 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF OXA-10 BETA-LACTAMASE COVALENTLY BOUND TO CYCLOBUTANONE BETA-LACTAM MIMIC
Authors
:
M. Gretes, N. C. J. Strynadka
Date
:
10 Jan 10 (Deposition) - 09 Mar 10 (Release) - 09 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Beta-Lactamase, Beta-Lactamase Inhibitor, Beta-Lactam Mimic, Cyclobutanone, Hemiketal, Antibiotic Resistance, Disulfide Bond, Hydrolase, Plasmid, Transposable Element
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. W. Johnson, M. Gretes, V. J. Goodfellow, L. Marrone, M. L. Heynen, N. C. Strynadka, G. I. Dmitrienko
Cyclobutanone Analogues Of Beta-Lactams Revisited: Insights Into Conformational Requirements For Inhibition Of Serine- And Metallo-Beta-Lactamases.
J. Am. Chem. Soc. V. 132 2558 2010
[
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
2a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
2b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
2c: LYSINE NZ-CARBOXYLIC ACID (KCXc)
2d: LYSINE NZ-CARBOXYLIC ACID (KCXd)
3a: (1S,3S,4S,5S)-7,7-DICHLORO-3-METHO... (LCEa)
3b: (1S,3S,4S,5S)-7,7-DICHLORO-3-METHO... (LCEb)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
11
Ligand/Ion
GLYCEROL
2
KCX
4
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
3
LCE
2
Ligand/Ion
(1S,3S,4S,5S)-7,7-DICHLORO-3-METHOXY-2-THIABICYCLO[3.2.0]HEPTAN-6-ONE-4-CARBOXYLIC ACID
4
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:80 , ARG A:131 , LYS A:134 , TYR A:135 , HOH A:854
BINDING SITE FOR RESIDUE GOL A 1
02
AC2
SOFTWARE
THR A:206 , ARG A:250 , LYS A:251 , LCE A:269
BINDING SITE FOR RESIDUE GOL A 267
03
AC3
SOFTWARE
ALA A:197 , PRO A:198 , GLU A:199 , TYR A:200 , GLU A:229 , HOH A:284 , THR C:107 , ARG C:109
BINDING SITE FOR RESIDUE GOL A 268
04
AC4
SOFTWARE
ALA A:66 , SER A:67 , KCX A:70 , SER A:115 , VAL A:117 , LEU A:155 , THR A:206 , GLY A:207 , PHE A:208 , ARG A:250 , GOL A:267 , HOH A:334
BINDING SITE FOR RESIDUE LCE A 269
05
AC5
SOFTWARE
ARG B:160 , HOH B:638
BINDING SITE FOR RESIDUE GOL B 1
06
AC6
SOFTWARE
ARG B:131 , LYS B:134 , TYR B:135
BINDING SITE FOR RESIDUE GOL B 267
07
AC7
SOFTWARE
ALA B:197 , PRO B:198 , GLU B:199 , TYR B:200 , GLU B:229 , HOH B:407 , THR D:107 , ARG D:109
BINDING SITE FOR RESIDUE GOL B 268
08
AC8
SOFTWARE
SER B:181 , LYS B:182 , HOH B:609
BINDING SITE FOR RESIDUE GOL B 269
09
AC9
SOFTWARE
ALA B:66 , SER B:67 , KCX B:70 , SER B:115 , VAL B:117 , THR B:206 , GLY B:207 , PHE B:208 , ARG B:250
BINDING SITE FOR RESIDUE LCE B 270
10
BC1
SOFTWARE
LYS B:95 , SER C:67 , SER C:115 , LYS C:205 , THR C:206 , GLY C:207 , PHE C:208 , ARG C:250 , HOH C:280 , HOH C:291 , HOH C:294
BINDING SITE FOR RESIDUE PO4 C 1
11
BC2
SOFTWARE
THR A:107 , ARG A:109 , HOH C:7 , ALA C:197 , PRO C:198 , GLU C:199 , TYR C:200 , GLU C:227 , GLU C:229 , HOH C:336
BINDING SITE FOR RESIDUE GOL C 267
12
BC3
SOFTWARE
LYS A:95 , SER D:67 , SER D:115 , LYS D:205 , THR D:206 , GLY D:207 , PHE D:208 , ARG D:250 , HOH D:286 , HOH D:758 , HOH D:834
BINDING SITE FOR RESIDUE PO4 D 2
13
BC4
SOFTWARE
HOH D:844
BINDING SITE FOR RESIDUE GOL D 1
14
BC5
SOFTWARE
HOH B:13 , THR B:107 , ARG B:109 , ALA D:197 , PRO D:198 , GLU D:199 , TYR D:200 , GLU D:227 , GLU D:229 , HOH D:305
BINDING SITE FOR RESIDUE GOL D 267
15
BC6
SOFTWARE
ASN D:145 , SER D:147 , GLN D:158 , HOH D:620
BINDING SITE FOR RESIDUE GOL D 268
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: BETA_LACTAMASE_D (A:65-75,B:65-75,C:65-75,D:65-75)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BETA_LACTAMASE_D
PS00337
Beta-lactamase class-D active site.
BLO10_PSEAI
65-75
4
A:65-75
B:65-75
C:65-75
D:65-75
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3lcea_ (A:)
1b: SCOP_d3lceb_ (B:)
1c: SCOP_d3lcec_ (C:)
1d: SCOP_d3lced_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
Class D beta-lactamase
(32)
Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
(25)
1a
d3lcea_
A:
1b
d3lceb_
B:
1c
d3lcec_
C:
1d
d3lced_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3lceC00 (C:21-266)
1b: CATH_3lceD00 (D:21-266)
1c: CATH_3lceA00 (A:21-265)
1d: CATH_3lceB00 (B:21-265)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-lactamase
(339)
Homologous Superfamily
:
DD-peptidase/beta-lactamase superfamily
(335)
Pseudomonas aeruginosa. Organism_taxid: 287. Strain: ah
(1)
1a
3lceC00
C:21-266
1b
3lceD00
D:21-266
1c
3lceA00
A:21-265
1d
3lceB00
B:21-265
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain C
Chain D
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (186 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
Biol.Unit 2 (92 KB)
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